WHO SMART Guideline: Surveillance and Outbreak Toolkit
0.2.1 - CI Build
WHO SMART Guideline: Surveillance and Outbreak Toolkit
0.2.1 - CI Build
WHO SMART Guideline: Surveillance and Outbreak Toolkit, published by WHO. This is not an authorized publication; it is the continuous build for version 0.2.1. This version is based on the current content of https://github.com/WorldHealthOrganization/smart-ot and changes regularly. See the Directory of published versions
| Draft as of 2023-11-07 |
<StructureMap xmlns="http://hl7.org/fhir">
<id value="AFROMRCIFQuestionnaireToLogicalModel"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><pre class="fml">
<b>map</b><span style="color: navy"> "</span>http://worldhealthorganization.github.io/smart-ot/StructureMap/AFROMRCIFQuestionnaireToLogicalModel<span style="color: navy">" = "</span>AFROMRCIFQuestionnaireToLogicalModel<span style="color: navy">"
</span><b>uses</b><span style="color: navy"> "</span><a href="http://hl7.org/fhir/R4/questionnaireresponse.html" title="QuestionnaireResponse">http://hl7.org/fhir/StructureDefinition/QuestionnaireResponse</a><span style="color: navy">" </span><b>alias </b>QuestionnaireResponse <b>as </b><b>source</b>
<b>uses</b><span style="color: navy"> "</span><a href="StructureDefinition-AFROMRCIF.html" title="Surveillance & Outbreak Toolkit - AFRO MRCIF">http://worldhealthorganization.github.io/smart-ot/StructureDefinition/AFROMRCIF</a><span style="color: navy">" </span><b>alias </b>MeaslesLogicalModel <b>as </b><b>target</b>
<b>group </b>MRCIFQuestionnaireToLogicalModel<span style="color: navy">(</span><b>source</b> <span style="color: maroon">qr</span><span style="color: navy"> : </span>QuestionnaireResponse, <b>target</b> <span style="color: maroon">measlesLm</span><span style="color: navy"> : </span>AFROMRCIF<span style="color: navy">)</span><span style="color: navy"> {
</span> qr.item<b> as </b><span style="color: maroon">item</span><b> where </b>linkId.value in ('investigationForm')<span style="color: navy"><b> -> </b></span><span style="color: maroon">measlesLm</span><b> as </b><span style="color: maroon">measlesLm</span><b> then </b>mapInvestigationForm<span style="color: navy">(</span><span style="color: maroon">item</span><span style="color: navy">, </span><span style="color: maroon">measlesLm</span><span style="color: navy">)</span> <i>"set Investigation form"</i><span style="color: navy">;</span>
<span style="color: navy">}
</span><b>group </b>mapInvestigationForm<span style="color: navy">(</span><b>source</b> <span style="color: maroon">investigationForm</span>, <b>target</b> <span style="color: maroon">measlesLm</span><span style="color: navy"> : </span>AFROMRCIF<span style="color: navy">)</span><span style="color: navy"> {
</span> investigationForm.item<b> as </b><span style="color: maroon">qrReportingSource</span><b> where </b>linkId.value in ('reportingSource')<span style="color: navy"><b> -> </b></span>measlesLm.ReportingSource<b> as </b><span style="color: maroon">lmReportingSource</span><b> then </b>mapReportingSource<span style="color: navy">(</span><span style="color: maroon">qrReportingSource</span><span style="color: navy">, </span><span style="color: maroon">lmReportingSource</span><span style="color: navy">)</span> <i>"set Reporting Source"</i><span style="color: navy">;</span>
investigationForm.item<b> as </b><span style="color: maroon">qrDemographics</span><b> where </b>linkId.value in ('demographics')<span style="color: navy"><b> -> </b></span>measlesLm.Demographics<b> as </b><span style="color: maroon">lmDemographics</span><b> then </b>mapDemographics<span style="color: navy">(</span><span style="color: maroon">qrDemographics</span><span style="color: navy">, </span><span style="color: maroon">lmDemographics</span><span style="color: navy">)</span> <i>"set Demographics"</i><span style="color: navy">;</span>
investigationForm.item<b> as </b><span style="color: maroon">qrVaccinationStatus</span><b> where </b>linkId.value in ('vaccinationStatus')<span style="color: navy"><b> -> </b></span>measlesLm.VaccinationStatus<b> as </b><span style="color: maroon">lmVaccinationStatus</span><b> then </b>mapVaccinationStatus<span style="color: navy">(</span><span style="color: maroon">qrVaccinationStatus</span><span style="color: navy">, </span><span style="color: maroon">lmVaccinationStatus</span><span style="color: navy">)</span> <i>"set Vaccination Status"</i><span style="color: navy">;</span>
investigationForm.item<b> as </b><span style="color: maroon">qrClinical</span><b> where </b>linkId.value in ('clinical')<span style="color: navy"><b> -> </b></span>measlesLm.Clinical<b> as </b><span style="color: maroon">lmClinical</span><b> then </b>mapClinical<span style="color: navy">(</span><span style="color: maroon">qrClinical</span><span style="color: navy">, </span><span style="color: maroon">lmClinical</span><span style="color: navy">)</span> <i>"set Clinical"</i><span style="color: navy">;</span>
investigationForm.item<b> as </b><span style="color: maroon">qrLaboratoryResults</span><b> where </b>linkId.value in ('laboratoryResults')<span style="color: navy"><b> -> </b></span>measlesLm.LaboratoryResults<b> as </b><span style="color: maroon">lmLaboratoryResults</span><b> then </b>mapLaboratoryResults<span style="color: navy">(</span><span style="color: maroon">qrLaboratoryResults</span><span style="color: navy">, </span><span style="color: maroon">lmLaboratoryResults</span><span style="color: navy">)</span> <i>"set Laboratory Results"</i><span style="color: navy">;</span>
investigationForm.item<b> as </b><span style="color: maroon">qrCaseInvestigation</span><b> where </b>linkId.value in ('qrCaseInvestigation')<span style="color: navy"><b> -> </b></span>measlesLm.qrCaseInvestigation<b> as </b><span style="color: maroon">lmCaseInvestigation</span><b> then </b>mapCaseInvestigation<span style="color: navy">(</span><span style="color: maroon">qrCaseInvestigation</span><span style="color: navy">, </span><span style="color: maroon">lmCaseInvestigation</span><span style="color: navy">)</span> <i>"set Contact Tracing"</i><span style="color: navy">;</span>
investigationForm.item<b> as </b><span style="color: maroon">qrClassification</span><b> where </b>linkId.value in ('classification')<span style="color: navy"><b> -> </b></span>measlesLm.Classification<b> as </b><span style="color: maroon">lmClassification</span><b> then </b>mapClassification<span style="color: navy">(</span><span style="color: maroon">qrClassification</span><span style="color: navy">, </span><span style="color: maroon">lmClassification</span><span style="color: navy">)</span> <i>"set Classification"</i><span style="color: navy">;</span>
<span style="color: navy">}
</span><b>group </b>mapReportingSource<span style="color: navy">(</span><b>source</b> <span style="color: maroon">qrReportingSource</span>, <b>target</b> <span style="color: maroon">lmReportingSource</span><span style="color: navy"> : </span>SOTMeaslesReportingSource<span style="color: navy">)</span><span style="color: navy"> {
</span> qrReportingSource.item<b> as </b><span style="color: maroon">item</span><b> then</b><span style="color: navy"> {
</span> item.answer first<b> as </b><span style="color: maroon">caseId</span><b> where </b>item.linkId = 'caseID'<b> then</b><span style="color: navy"> {
</span> caseId.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmReportingSource.UniqueId = <span style="color: maroon">value</span> <i>"set01"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set"</i><span style="color: navy">;</span>
qrReportingSource.item<b> as </b><span style="color: maroon">qrReportingInstitution</span><b> where </b>linkId.value in ('reportingInstitution')<span style="color: navy"><b> -> </b></span><span style="color: maroon">lmReportingSource</span><b> as </b><span style="color: maroon">lmReportingSource</span><b> then </b>mapReportingInstitution<span style="color: navy">(</span><span style="color: maroon">qrReportingInstitution</span><span style="color: navy">, </span><span style="color: maroon">lmReportingSource</span><span style="color: navy">)</span> <i>"set reporting institution"</i><span style="color: navy">;</span>
item.answer first<b> as </b><span style="color: maroon">dateReportedNational</span><b> where </b>item.linkId = 'DateReportedNational'<b> then</b><span style="color: navy"> {
</span> dateReportedNational.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmReportingSource.DateReportedNational = <span style="color: maroon">value</span> <i>"set date reported national"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set date reported national"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set reporting source"</i><span style="color: navy">;</span>
<span style="color: navy">}
</span><b>group </b>mapReportingInstitution<span style="color: navy">(</span><b>source</b> <span style="color: maroon">qrReportingInstitution</span>, <b>target</b> <span style="color: maroon">lmReportingSource</span><span style="color: navy"> : </span>SOTMeaslesReportingSource<span style="color: navy">)</span><span style="color: navy"> {
</span> qrReportingInstitution.item<b> as </b><span style="color: maroon">item</span><b> then</b><span style="color: navy"> {
</span> item.answer first<b> as </b><span style="color: maroon">reportingFacility</span><b> where </b>item.linkId = 'reportingFacility'<b> then</b><span style="color: navy"> {
</span> reportingFacility.value<b> as </b><span style="color: maroon">healthFacilityName</span><span style="color: navy"><b> -> </b></span>lmReportingSource.HealthServiceName = <span style="color: maroon">healthFacilityName</span> <i>"set health facility name"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set health facility name"</i><span style="color: navy">;</span>
qrReportingInstitution<span style="color: navy"><b> -> </b></span><b>create</b><span style="color: navy">(</span><span style="color: blue">'Address'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">lmAddress</span><b> then</b><span style="color: navy"> {
</span> item.answer first<b> as </b><span style="color: maroon">country</span><b> where </b>item.linkId = 'country'<b> then</b><span style="color: navy"> {
</span> country.value<b> as </b><span style="color: maroon">countryValue</span><span style="color: navy"><b> -> </b></span>lmAddress.country = <span style="color: maroon">countryValue</span> <i>"set country"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set country"</i><span style="color: navy">;</span>
item.answer first<b> as </b><span style="color: maroon">municipality</span><b> where </b>item.linkId = 'municipality'<b> then</b><span style="color: navy"> {
</span> municipality.value<b> as </b><span style="color: maroon">cityValue</span><span style="color: navy"><b> -> </b></span>lmAddress.city = <span style="color: maroon">cityValue</span> <i>"set city"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set city "</i><span style="color: navy">;</span>
item.answer first<b> as </b><span style="color: maroon">state</span><b> where </b>item.linkId = 'state'<b> then</b><span style="color: navy"> {
</span> state.value<b> as </b><span style="color: maroon">stateValue</span><span style="color: navy"><b> -> </b></span>lmAddress.state = <span style="color: maroon">stateValue</span> <i>"set state"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set state"</i><span style="color: navy">;</span>
item.answer first<b> as </b><span style="color: maroon">locality</span><b> where </b>item.linkId = 'locality'<b> then</b><span style="color: navy"> {
</span> locality.value<b> as </b><span style="color: maroon">localityValue</span><span style="color: navy"><b> -> </b></span>lmAddress.line = <span style="color: maroon">localityValue</span> <i>"set locality"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set locality"</i><span style="color: navy">;</span>
qrReportingInstitution<span style="color: navy"><b> -> </b></span>lmReportingSource.PlaceOfReporting = <span style="color: maroon">lmAddress</span> <i>"assign address"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set address"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set reporting institution"</i><span style="color: navy">;</span>
<span style="color: navy">}
</span><b>group </b>mapDemographics<span style="color: navy">(</span><b>source</b> <span style="color: maroon">qrDemographics</span>, <b>target</b> <span style="color: maroon">lmDemographics</span><span style="color: navy"> : </span>SOTMeaslesDemographic<span style="color: navy">)</span><span style="color: navy"> {
</span> qrDemographics.item<b> as </b><span style="color: maroon">item</span><b> then</b><span style="color: navy"> {
</span> item.answer first<b> as </b><span style="color: maroon">name</span><b> where </b>item.linkId = 'name'<b> then</b><span style="color: navy"> {
</span> name.value<b> as </b><span style="color: maroon">nameValue</span><span style="color: navy"><b> -> </b></span> <b>create</b><span style="color: navy">(</span><span style="color: blue">'HumanName'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">lmName</span><span style="color: navy">, </span> lmName.family = <span style="color: maroon">nameValue</span><span style="color: navy">, </span> lmDemographics.Name = <span style="color: maroon">lmName</span> <i>"set name"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set name"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">adapt address to be separate mappings</span>
item.answer first<b> as </b><span style="color: maroon">address</span><b> where </b>item.linkId = 'address'<b> then</b><span style="color: navy"> {
</span> address.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span> <b>create</b><span style="color: navy">(</span><span style="color: blue">'Address'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">lmAddress</span><span style="color: navy">, </span> lmAddress.text = <span style="color: maroon">value</span><span style="color: navy">, </span> lmDemographics.PlaceOfResidence = <span style="color: maroon">lmAddress</span> <i>"set address"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set address"</i><span style="color: navy">;</span>
item.answer first<b> as </b><span style="color: maroon">location</span><b> where </b>item.linkId = 'localityType'<b> then</b><span style="color: navy"> {
</span> location.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmDemographics.LocalityType = <span style="color: maroon">value</span> <i>"set Locality Type"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set Locality Type"</i><span style="color: navy">;</span>
item.answer first<b> as </b><span style="color: maroon">sex</span><b> where </b>item.linkId = 'sex'<b> then</b><span style="color: navy"> {
</span> sex.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmDemographics.Sex = <span style="color: maroon">value</span> <i>"set sex"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set sex"</i><span style="color: navy">;</span>
item.answer first<b> as </b><span style="color: maroon">DoB</span><b> where </b>item.linkId = 'DoB'<b> then</b><span style="color: navy"> {
</span> DoB.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmDemographics.DateOfBirth = <span style="color: maroon">value</span> <i>"set DoB"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set DoB"</i><span style="color: navy">;</span>
item.answer first<b> as </b><span style="color: maroon">ageOnset</span><b> where </b>item.linkId = 'ageOnset'<b> then</b><span style="color: navy"> {
</span> ageOnset.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span> <b>create</b><span style="color: navy">(</span><span style="color: blue">'Quantity'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">lmAgeOnset</span><span style="color: navy">, </span> lmAgeOnset.value = <span style="color: maroon">value</span><span style="color: navy">, </span> lmDemographics.Age = <span style="color: maroon">lmAgeOnset</span> <i>"set ageOnset"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set ageOnset"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set demographics"</i><span style="color: navy">;</span>
<span style="color: navy">}
</span><b>group </b>mapVaccinationStatus<span style="color: navy">(</span><b>source</b> <span style="color: maroon">qrVaccinationStatus</span>, <b>target</b> <span style="color: maroon">lmVaccinationStatus</span><span style="color: navy"> : </span>SOTMeaslesVaccinationStatus<span style="color: navy">)</span><span style="color: navy"> {
</span> qrVaccinationStatus.item<b> as </b><span style="color: maroon">item</span><b> then</b><span style="color: navy"> {
</span> item.answer first<b> as </b><span style="color: maroon">lastDoseDate</span><b> where </b>item.linkId = 'lastDoseDate'<b> then</b><span style="color: navy"> {
</span> lastDoseDate.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmVaccinationStatus.LastDoseDate = <span style="color: maroon">value</span> <i>"set Last Dose Date"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set last dose date"</i><span style="color: navy">;</span>
item.answer first<b> as </b><span style="color: maroon">noOfDoses</span><b> where </b>item.linkId = 'noOfDoses'<b> then</b><span style="color: navy"> {
</span> noOfDoses.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmVaccinationStatus.NumberOfDoses = <span style="color: maroon">value</span> <i>"set number of doses"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set"</i><span style="color: navy">;</span>
item.answer first<b> as </b><span style="color: maroon">vaccineType</span><b> where </b>item.linkId = 'vaccineType'<b> then</b><span style="color: navy"> {
</span> vaccineType.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmVaccinationStatus.VaccineType = <span style="color: maroon">value</span> <i>"set vaccine type"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set"</i><span style="color: navy">;</span>
<span style="color: navy">}
</span><b>group </b>mapClinical<span style="color: navy">(</span><b>source</b> <span style="color: maroon">qrClinical</span>, <b>target</b> <span style="color: maroon">lmClinical</span><span style="color: navy"> : </span>SOTMeaslesClinical<span style="color: navy">)</span><span style="color: navy"> {
</span> qrClinical.item<b> as </b><span style="color: maroon">item</span><b> then</b><span style="color: navy"> {
</span> item.answer first<b> as </b><span style="color: maroon">fever</span><b> where </b>item.linkId = 'fever'<b> then</b><span style="color: navy"> {
</span> fever.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmClinical.Fever = <span style="color: maroon">value</span> <i>"set Fever"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set"</i><span style="color: navy">;</span>
item.answer first<b> as </b><span style="color: maroon">rash</span><b> where </b>item.linkId = 'rash'<b> then</b><span style="color: navy"> {
</span> rash.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmClinical.Rash = <span style="color: maroon">value</span> <i>"set Rash"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set"</i><span style="color: navy">;</span>
item.answer first<b> as </b><span style="color: maroon">cough</span><b> where </b>item.linkId = 'cough'<b> then</b><span style="color: navy"> {
</span> cough.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmClinical.Cough = <span style="color: maroon">value</span> <i>"set Cough"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set"</i><span style="color: navy">;</span>
item.answer first<b> as </b><span style="color: maroon">conjunctivitis</span><b> where </b>item.linkId = 'conjunctivitis'<b> then</b><span style="color: navy"> {
</span> conjunctivitis.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmClinical.Conjunctivitis = <span style="color: maroon">value</span> <i>"set Conjunctivitis"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set"</i><span style="color: navy">;</span>
item.answer first<b> as </b><span style="color: maroon">coryza</span><b> where </b>item.linkId = 'coryza'<b> then</b><span style="color: navy"> {
</span> coryza.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmClinical.Coryza = <span style="color: maroon">value</span> <i>"set Coryza"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set"</i><span style="color: navy">;</span>
item.answer first<b> as </b><span style="color: maroon">lymphadenopathy</span><b> where </b>item.linkId = 'lymphadenopathy'<b> then</b><span style="color: navy"> {
</span> lymphadenopathy.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmClinical.Lymphadenopathy = <span style="color: maroon">value</span> <i>"set Lymphadenopathy"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set"</i><span style="color: navy">;</span>
item.answer first<b> as </b><span style="color: maroon">jointPain</span><b> where </b>item.linkId = 'jointPain'<b> then</b><span style="color: navy"> {
</span> jointPain.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmClinical.JointPain = <span style="color: maroon">value</span> <i>"set Arthralgia"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set"</i><span style="color: navy">;</span>
item.answer first<b> as </b><span style="color: maroon">admitted</span><b> where </b>item.linkId = 'admitted'<b> then</b><span style="color: navy"> {
</span> admitted.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmClinical.HistoryOfHospitalization = <span style="color: maroon">value</span> <i>"set Hospitalized"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set"</i><span style="color: navy">;</span>
item.answer first<b> as </b><span style="color: maroon">admittedHCFName</span><b> where </b>item.linkId = 'admittedHCFName'<b> then</b><span style="color: navy"> {
</span> admittedHCFName.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmClinical.HospitalName = <span style="color: maroon">value</span> <i>"set Hospital Name"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set"</i><span style="color: navy">;</span>
item.answer first<b> as </b><span style="color: maroon">outcome</span><b> where </b>item.linkId = 'outcome'<b> then</b><span style="color: navy"> {
</span> outcome.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmClinical.Outcome = <span style="color: maroon">value</span> <i>"set Outcome"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set"</i><span style="color: navy">;</span>
item.answer first<b> as </b><span style="color: maroon">answer</span><b> where </b>item.linkId = 'travelledOutside'<b> then</b><span style="color: navy"> {
</span> answer.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmClinical.travelledOutside = <span style="color: maroon">value</span> <i>"set specify virus"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set"</i><span style="color: navy">;</span>
item.answer first<b> as </b><span style="color: maroon">answer</span><b> where </b>item.linkId = 'infectionSetting'<b> then</b><span style="color: navy"> {
</span> answer.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmClinical.specifyInfectionSetting = <span style="color: maroon">value</span> <i>"set specify virus"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set clinical"</i><span style="color: navy">;</span>
<span style="color: navy">}
</span><b>group </b>mapLaboratoryResults<span style="color: navy">(</span><b>source</b> <span style="color: maroon">qrLaboratoryResults</span>, <b>target</b> <span style="color: maroon">lmLaboratoryResults</span><span style="color: navy"> : </span>LaboratoryResultsLogicalModel<span style="color: navy">)</span><span style="color: navy"> {
</span> qrLaboratoryResults.item<b> as </b><span style="color: maroon">item</span><b> then</b><span style="color: navy"> {
</span> item.answer first<b> as </b><span style="color: maroon">answer</span><b> where </b>item.linkId = 'sampleType'<b> then</b><span style="color: navy"> {
</span> answer.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmLaboratoryResults.SampleType = <span style="color: maroon">value</span> <i>"set SampleType"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set"</i><span style="color: navy">;</span>
item.answer first<b> as </b><span style="color: maroon">answer</span><b> where </b>item.linkId = 'collectionDate'<b> then</b><span style="color: navy"> {
</span> answer.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmLaboratoryResults.SpecimenCollectionDate = <span style="color: maroon">value</span> <i>"set SpecimenCollectionDate"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set"</i><span style="color: navy">;</span>
item.answer first<b> as </b><span style="color: maroon">answer</span><b> where </b>item.linkId = 'labName'<b> then</b><span style="color: navy"> {
</span> answer.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmLaboratoryResults.LabName = <span style="color: maroon">value</span> <i>"set Shipment Date"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set"</i><span style="color: navy">;</span>
item.answer first<b> as </b><span style="color: maroon">answer</span><b> where </b>item.linkId = 'specimenSentDate'<b> then</b><span style="color: navy"> {
</span> answer.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmLaboratoryResults.SpecimenSentDate = <span style="color: maroon">value</span> <i>"set SpecimenSentDate"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set"</i><span style="color: navy">;</span>
item.answer first<b> as </b><span style="color: maroon">answer</span><b> where </b>item.linkId = 'specimenReceivedDate'<b> then</b><span style="color: navy"> {
</span> answer.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmLaboratoryResults.SpecimenRecdDate = <span style="color: maroon">value</span> <i>"set SpecimenRecdDate"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set"</i><span style="color: navy">;</span>
item.answer first<b> as </b><span style="color: maroon">answer</span><b> where </b>item.linkId = 'testPerformed'<b> then</b><span style="color: navy"> {
</span> answer.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmLaboratoryResults.TypeOfTest = <span style="color: maroon">value</span> <i>"set TypeOfTest"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set"</i><span style="color: navy">;</span>
item.answer first<b> as </b><span style="color: maroon">answer</span><b> where </b>item.linkId = 'result'<b> then</b><span style="color: navy"> {
</span> answer.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmLaboratoryResults.Results = <span style="color: maroon">value</span> <i>"set Results"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set"</i><span style="color: navy">;</span>
item.answer first<b> as </b><span style="color: maroon">answer</span><b> where </b>item.linkId = 'specifyVirus'<b> then</b><span style="color: navy"> {
</span> answer.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmLaboratoryResults.ViralGenotype = <span style="color: maroon">value</span> <i>"set specify virus"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set labs"</i><span style="color: navy">;</span>
<span style="color: navy">}
</span><b>group </b>mapCaseInvestigation<span style="color: navy">(</span><b>source</b> <span style="color: maroon">qrCaseInvestigation</span>, <b>target</b> <span style="color: maroon">lmCaseInvestigation</span><span style="color: navy"> : </span>SOTMeaslesCaseInvestigation<span style="color: navy">)</span><span style="color: navy"> {
</span> qrCaseInvestigation.item<b> as </b><span style="color: maroon">item</span><b> then</b><span style="color: navy"> {
</span> item.answer first<b> as </b><span style="color: maroon">dateOfConsultation</span><b> where </b>item.linkId = 'DateOfConsultation'<b> then</b><span style="color: navy"> {
</span> dateOfConsultation.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmReportingSource.DateOfConsultation = <span style="color: maroon">value</span> <i>"set date of consultation"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set date of consultation"</i><span style="color: navy">;</span>
item.answer first<b> as </b><span style="color: maroon">dateReportedLocal</span><b> where </b>item.linkId = 'dateReported'<b> then</b><span style="color: navy"> {
</span> dateReportedLocal.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmReportingSource.DateReportedLocal = <span style="color: maroon">value</span> <i>"set date reported local"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set date reported local"</i><span style="color: navy">;</span>
item.answer first<b> as </b><span style="color: maroon">rashOnsetDate</span><b> where </b>item.linkId = 'rashOnsetDate'<b> then</b><span style="color: navy"> {
</span> rashOnsetDate.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmClinical.RashOnsetDate = <span style="color: maroon">value</span> <i>"set Rash Onset Date"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set contact tracing"</i><span style="color: navy">;</span>
<span style="color: navy">}
</span><b>group </b>mapClassification<span style="color: navy">(</span><b>source</b> <span style="color: maroon">qrClassification</span>, <b>target</b> <span style="color: maroon">lmClassification</span><span style="color: navy"> : </span>ClassificationLogicalModel<span style="color: navy">)</span><span style="color: navy"> {
</span> qrClassification.item<b> as </b><span style="color: maroon">item</span><b> then</b><span style="color: navy"> {
</span> item.answer first<b> as </b><span style="color: maroon">answer</span><b> where </b>item.linkId = 'finalClassification'<b> then</b><span style="color: navy"> {
</span> answer.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmClassification.FinalClassification = <span style="color: maroon">value</span> <i>"set finalClassification"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set"</i><span style="color: navy">;</span>
item.answer first<b> as </b><span style="color: maroon">reportedBy</span><b> where </b>item.linkId = 'reportedBy'<b> then</b><span style="color: navy"> {
</span> reportedBy.value<b> as </b><span style="color: maroon">value</span><span style="color: navy"><b> -> </b></span>lmClassification.ReportedBy = <span style="color: maroon">value</span> <i>"set case ID"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set case ID"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"set classification"</i><span style="color: navy">;</span>
<span style="color: navy">}
</span></pre></div>
</text>
<url
value="http://worldhealthorganization.github.io/smart-ot/StructureMap/AFROMRCIFQuestionnaireToLogicalModel"/>
<version value="0.2.1"/>
<name value="AFROMRCIFQuestionnaireToLogicalModel"/>
<status value="draft"/>
<date value="2023-11-07T05:59:29+00:00"/>
<publisher value="WHO"/>
<contact>
<name value="WHO"/>
<telecom>
<system value="url"/>
<value value="http://who.int"/>
</telecom>
</contact>
<jurisdiction>
<coding>
<system value="http://unstats.un.org/unsd/methods/m49/m49.htm"/>
<code value="001"/>
</coding>
</jurisdiction>
<structure>
<url
value="http://hl7.org/fhir/StructureDefinition/QuestionnaireResponse"/>
<mode value="source"/>
<alias value="QuestionnaireResponse"/>
</structure>
<structure>
<url
value="http://worldhealthorganization.github.io/smart-ot/StructureDefinition/AFROMRCIF"/>
<mode value="target"/>
<alias value="MeaslesLogicalModel"/>
</structure>
<group>
<name value="MRCIFQuestionnaireToLogicalModel"/>
<typeMode value="none"/>
<input>
<name value="qr"/>
<type value="QuestionnaireResponse"/>
<mode value="source"/>
</input>
<input>
<name value="measlesLm"/>
<type value="AFROMRCIF"/>
<mode value="target"/>
</input>
<rule>
<name value="set Investigation form"/>
<source>
<context value="qr"/>
<element value="item"/>
<variable value="item"/>
<condition value="linkId.value in ('investigationForm')"/>
</source>
<target>
<contextType value="variable"/>
<variable value="measlesLm"/>
<transform value="copy"/>
<parameter>
<valueId value="measlesLm"/>
</parameter>
</target>
<dependent>
<name value="mapInvestigationForm"/>
<variable value="item"/>
<variable value="measlesLm"/>
</dependent>
</rule>
</group>
<group>
<name value="mapInvestigationForm"/>
<typeMode value="none"/>
<input>
<name value="investigationForm"/>
<mode value="source"/>
</input>
<input>
<name value="measlesLm"/>
<type value="AFROMRCIF"/>
<mode value="target"/>
</input>
<rule>
<name value="set Reporting Source"/>
<source>
<context value="investigationForm"/>
<element value="item"/>
<variable value="qrReportingSource"/>
<condition value="linkId.value in ('reportingSource')"/>
</source>
<target>
<context value="measlesLm"/>
<contextType value="variable"/>
<element value="ReportingSource"/>
<variable value="lmReportingSource"/>
</target>
<dependent>
<name value="mapReportingSource"/>
<variable value="qrReportingSource"/>
<variable value="lmReportingSource"/>
</dependent>
</rule>
<rule>
<name value="set Demographics"/>
<source>
<context value="investigationForm"/>
<element value="item"/>
<variable value="qrDemographics"/>
<condition value="linkId.value in ('demographics')"/>
</source>
<target>
<context value="measlesLm"/>
<contextType value="variable"/>
<element value="Demographics"/>
<variable value="lmDemographics"/>
</target>
<dependent>
<name value="mapDemographics"/>
<variable value="qrDemographics"/>
<variable value="lmDemographics"/>
</dependent>
</rule>
<rule>
<name value="set Vaccination Status"/>
<source>
<context value="investigationForm"/>
<element value="item"/>
<variable value="qrVaccinationStatus"/>
<condition value="linkId.value in ('vaccinationStatus')"/>
</source>
<target>
<context value="measlesLm"/>
<contextType value="variable"/>
<element value="VaccinationStatus"/>
<variable value="lmVaccinationStatus"/>
</target>
<dependent>
<name value="mapVaccinationStatus"/>
<variable value="qrVaccinationStatus"/>
<variable value="lmVaccinationStatus"/>
</dependent>
</rule>
<rule>
<name value="set Clinical"/>
<source>
<context value="investigationForm"/>
<element value="item"/>
<variable value="qrClinical"/>
<condition value="linkId.value in ('clinical')"/>
</source>
<target>
<context value="measlesLm"/>
<contextType value="variable"/>
<element value="Clinical"/>
<variable value="lmClinical"/>
</target>
<dependent>
<name value="mapClinical"/>
<variable value="qrClinical"/>
<variable value="lmClinical"/>
</dependent>
</rule>
<rule>
<name value="set Laboratory Results"/>
<source>
<context value="investigationForm"/>
<element value="item"/>
<variable value="qrLaboratoryResults"/>
<condition value="linkId.value in ('laboratoryResults')"/>
</source>
<target>
<context value="measlesLm"/>
<contextType value="variable"/>
<element value="LaboratoryResults"/>
<variable value="lmLaboratoryResults"/>
</target>
<dependent>
<name value="mapLaboratoryResults"/>
<variable value="qrLaboratoryResults"/>
<variable value="lmLaboratoryResults"/>
</dependent>
</rule>
<rule>
<name value="set Contact Tracing"/>
<source>
<context value="investigationForm"/>
<element value="item"/>
<variable value="qrCaseInvestigation"/>
<condition value="linkId.value in ('qrCaseInvestigation')"/>
</source>
<target>
<context value="measlesLm"/>
<contextType value="variable"/>
<element value="qrCaseInvestigation"/>
<variable value="lmCaseInvestigation"/>
</target>
<dependent>
<name value="mapCaseInvestigation"/>
<variable value="qrCaseInvestigation"/>
<variable value="lmCaseInvestigation"/>
</dependent>
</rule>
<rule>
<name value="set Classification"/>
<source>
<context value="investigationForm"/>
<element value="item"/>
<variable value="qrClassification"/>
<condition value="linkId.value in ('classification')"/>
</source>
<target>
<context value="measlesLm"/>
<contextType value="variable"/>
<element value="Classification"/>
<variable value="lmClassification"/>
</target>
<dependent>
<name value="mapClassification"/>
<variable value="qrClassification"/>
<variable value="lmClassification"/>
</dependent>
</rule>
</group>
<group>
<name value="mapReportingSource"/>
<typeMode value="none"/>
<input>
<name value="qrReportingSource"/>
<mode value="source"/>
</input>
<input>
<name value="lmReportingSource"/>
<type value="SOTMeaslesReportingSource"/>
<mode value="target"/>
</input>
<rule>
<name value="set reporting source"/>
<source>
<context value="qrReportingSource"/>
<element value="item"/>
<variable value="item"/>
</source>
<rule>
<name value="set"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="caseId"/>
<condition value="item.linkId = 'caseID'"/>
</source>
<rule>
<name value="set01"/>
<source>
<context value="caseId"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmReportingSource"/>
<contextType value="variable"/>
<element value="UniqueId"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set reporting institution"/>
<source>
<context value="qrReportingSource"/>
<element value="item"/>
<variable value="qrReportingInstitution"/>
<condition value="linkId.value in ('reportingInstitution')"/>
</source>
<target>
<contextType value="variable"/>
<variable value="lmReportingSource"/>
<transform value="copy"/>
<parameter>
<valueId value="lmReportingSource"/>
</parameter>
</target>
<dependent>
<name value="mapReportingInstitution"/>
<variable value="qrReportingInstitution"/>
<variable value="lmReportingSource"/>
</dependent>
</rule>
<rule>
<name value="set date reported national"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="dateReportedNational"/>
<condition value="item.linkId = 'DateReportedNational'"/>
</source>
<rule>
<name value="set date reported national"/>
<source>
<context value="dateReportedNational"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmReportingSource"/>
<contextType value="variable"/>
<element value="DateReportedNational"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
</rule>
</group>
<group>
<name value="mapReportingInstitution"/>
<typeMode value="none"/>
<input>
<name value="qrReportingInstitution"/>
<mode value="source"/>
</input>
<input>
<name value="lmReportingSource"/>
<type value="SOTMeaslesReportingSource"/>
<mode value="target"/>
</input>
<rule>
<name value="set reporting institution"/>
<source>
<context value="qrReportingInstitution"/>
<element value="item"/>
<variable value="item"/>
</source>
<rule>
<name value="set health facility name"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="reportingFacility"/>
<condition value="item.linkId = 'reportingFacility'"/>
</source>
<rule>
<name value="set health facility name"/>
<source>
<context value="reportingFacility"/>
<element value="value"/>
<variable value="healthFacilityName"/>
</source>
<target>
<context value="lmReportingSource"/>
<contextType value="variable"/>
<element value="HealthServiceName"/>
<transform value="copy"/>
<parameter>
<valueId value="healthFacilityName"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set address"/>
<source>
<context value="qrReportingInstitution"/>
</source>
<target>
<contextType value="variable"/>
<variable value="lmAddress"/>
<transform value="create"/>
<parameter>
<valueString value="Address"/>
</parameter>
</target>
<rule>
<name value="set country"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="country"/>
<condition value="item.linkId = 'country'"/>
</source>
<rule>
<name value="set country"/>
<source>
<context value="country"/>
<element value="value"/>
<variable value="countryValue"/>
</source>
<target>
<context value="lmAddress"/>
<contextType value="variable"/>
<element value="country"/>
<transform value="copy"/>
<parameter>
<valueId value="countryValue"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set city "/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="municipality"/>
<condition value="item.linkId = 'municipality'"/>
</source>
<rule>
<name value="set city"/>
<source>
<context value="municipality"/>
<element value="value"/>
<variable value="cityValue"/>
</source>
<target>
<context value="lmAddress"/>
<contextType value="variable"/>
<element value="city"/>
<transform value="copy"/>
<parameter>
<valueId value="cityValue"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set state"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="state"/>
<condition value="item.linkId = 'state'"/>
</source>
<rule>
<name value="set state"/>
<source>
<context value="state"/>
<element value="value"/>
<variable value="stateValue"/>
</source>
<target>
<context value="lmAddress"/>
<contextType value="variable"/>
<element value="state"/>
<transform value="copy"/>
<parameter>
<valueId value="stateValue"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set locality"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="locality"/>
<condition value="item.linkId = 'locality'"/>
</source>
<rule>
<name value="set locality"/>
<source>
<context value="locality"/>
<element value="value"/>
<variable value="localityValue"/>
</source>
<target>
<context value="lmAddress"/>
<contextType value="variable"/>
<element value="line"/>
<transform value="copy"/>
<parameter>
<valueId value="localityValue"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="assign address"/>
<source>
<context value="qrReportingInstitution"/>
</source>
<target>
<context value="lmReportingSource"/>
<contextType value="variable"/>
<element value="PlaceOfReporting"/>
<transform value="copy"/>
<parameter>
<valueId value="lmAddress"/>
</parameter>
</target>
</rule>
</rule>
</rule>
</group>
<group>
<name value="mapDemographics"/>
<typeMode value="none"/>
<input>
<name value="qrDemographics"/>
<mode value="source"/>
</input>
<input>
<name value="lmDemographics"/>
<type value="SOTMeaslesDemographic"/>
<mode value="target"/>
</input>
<rule>
<name value="set demographics"/>
<source>
<context value="qrDemographics"/>
<element value="item"/>
<variable value="item"/>
</source>
<rule>
<name value="set name"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="name"/>
<condition value="item.linkId = 'name'"/>
</source>
<rule>
<name value="set name"/>
<source>
<context value="name"/>
<element value="value"/>
<variable value="nameValue"/>
</source>
<target>
<contextType value="variable"/>
<variable value="lmName"/>
<transform value="create"/>
<parameter>
<valueString value="HumanName"/>
</parameter>
</target>
<target>
<context value="lmName"/>
<contextType value="variable"/>
<element value="family"/>
<transform value="copy"/>
<parameter>
<valueId value="nameValue"/>
</parameter>
</target>
<target>
<context value="lmDemographics"/>
<contextType value="variable"/>
<element value="Name"/>
<transform value="copy"/>
<parameter>
<valueId value="lmName"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set address"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="address"/>
<condition value="item.linkId = 'address'"/>
</source>
<rule>
<name value="set address"/>
<source>
<context value="address"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<contextType value="variable"/>
<variable value="lmAddress"/>
<transform value="create"/>
<parameter>
<valueString value="Address"/>
</parameter>
</target>
<target>
<context value="lmAddress"/>
<contextType value="variable"/>
<element value="text"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
<target>
<context value="lmDemographics"/>
<contextType value="variable"/>
<element value="PlaceOfResidence"/>
<transform value="copy"/>
<parameter>
<valueId value="lmAddress"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set Locality Type"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="location"/>
<condition value="item.linkId = 'localityType'"/>
</source>
<rule>
<name value="set Locality Type"/>
<source>
<context value="location"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmDemographics"/>
<contextType value="variable"/>
<element value="LocalityType"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set sex"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="sex"/>
<condition value="item.linkId = 'sex'"/>
</source>
<rule>
<name value="set sex"/>
<source>
<context value="sex"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmDemographics"/>
<contextType value="variable"/>
<element value="Sex"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set DoB"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="DoB"/>
<condition value="item.linkId = 'DoB'"/>
</source>
<rule>
<name value="set DoB"/>
<source>
<context value="DoB"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmDemographics"/>
<contextType value="variable"/>
<element value="DateOfBirth"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set ageOnset"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="ageOnset"/>
<condition value="item.linkId = 'ageOnset'"/>
</source>
<rule>
<name value="set ageOnset"/>
<source>
<context value="ageOnset"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<contextType value="variable"/>
<variable value="lmAgeOnset"/>
<transform value="create"/>
<parameter>
<valueString value="Quantity"/>
</parameter>
</target>
<target>
<context value="lmAgeOnset"/>
<contextType value="variable"/>
<element value="value"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
<target>
<context value="lmDemographics"/>
<contextType value="variable"/>
<element value="Age"/>
<transform value="copy"/>
<parameter>
<valueId value="lmAgeOnset"/>
</parameter>
</target>
</rule>
</rule>
</rule>
</group>
<group>
<name value="mapVaccinationStatus"/>
<typeMode value="none"/>
<input>
<name value="qrVaccinationStatus"/>
<mode value="source"/>
</input>
<input>
<name value="lmVaccinationStatus"/>
<type value="SOTMeaslesVaccinationStatus"/>
<mode value="target"/>
</input>
<rule>
<name value="set"/>
<source>
<context value="qrVaccinationStatus"/>
<element value="item"/>
<variable value="item"/>
</source>
<rule>
<name value="set last dose date"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="lastDoseDate"/>
<condition value="item.linkId = 'lastDoseDate'"/>
</source>
<rule>
<name value="set Last Dose Date"/>
<source>
<context value="lastDoseDate"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmVaccinationStatus"/>
<contextType value="variable"/>
<element value="LastDoseDate"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="noOfDoses"/>
<condition value="item.linkId = 'noOfDoses'"/>
</source>
<rule>
<name value="set number of doses"/>
<source>
<context value="noOfDoses"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmVaccinationStatus"/>
<contextType value="variable"/>
<element value="NumberOfDoses"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="vaccineType"/>
<condition value="item.linkId = 'vaccineType'"/>
</source>
<rule>
<name value="set vaccine type"/>
<source>
<context value="vaccineType"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmVaccinationStatus"/>
<contextType value="variable"/>
<element value="VaccineType"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
</rule>
</group>
<group>
<name value="mapClinical"/>
<typeMode value="none"/>
<input>
<name value="qrClinical"/>
<mode value="source"/>
</input>
<input>
<name value="lmClinical"/>
<type value="SOTMeaslesClinical"/>
<mode value="target"/>
</input>
<rule>
<name value="set clinical"/>
<source>
<context value="qrClinical"/>
<element value="item"/>
<variable value="item"/>
</source>
<rule>
<name value="set"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="fever"/>
<condition value="item.linkId = 'fever'"/>
</source>
<rule>
<name value="set Fever"/>
<source>
<context value="fever"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmClinical"/>
<contextType value="variable"/>
<element value="Fever"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="rash"/>
<condition value="item.linkId = 'rash'"/>
</source>
<rule>
<name value="set Rash"/>
<source>
<context value="rash"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmClinical"/>
<contextType value="variable"/>
<element value="Rash"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="cough"/>
<condition value="item.linkId = 'cough'"/>
</source>
<rule>
<name value="set Cough"/>
<source>
<context value="cough"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmClinical"/>
<contextType value="variable"/>
<element value="Cough"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="conjunctivitis"/>
<condition value="item.linkId = 'conjunctivitis'"/>
</source>
<rule>
<name value="set Conjunctivitis"/>
<source>
<context value="conjunctivitis"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmClinical"/>
<contextType value="variable"/>
<element value="Conjunctivitis"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="coryza"/>
<condition value="item.linkId = 'coryza'"/>
</source>
<rule>
<name value="set Coryza"/>
<source>
<context value="coryza"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmClinical"/>
<contextType value="variable"/>
<element value="Coryza"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="lymphadenopathy"/>
<condition value="item.linkId = 'lymphadenopathy'"/>
</source>
<rule>
<name value="set Lymphadenopathy"/>
<source>
<context value="lymphadenopathy"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmClinical"/>
<contextType value="variable"/>
<element value="Lymphadenopathy"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="jointPain"/>
<condition value="item.linkId = 'jointPain'"/>
</source>
<rule>
<name value="set Arthralgia"/>
<source>
<context value="jointPain"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmClinical"/>
<contextType value="variable"/>
<element value="JointPain"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="admitted"/>
<condition value="item.linkId = 'admitted'"/>
</source>
<rule>
<name value="set Hospitalized"/>
<source>
<context value="admitted"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmClinical"/>
<contextType value="variable"/>
<element value="HistoryOfHospitalization"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="admittedHCFName"/>
<condition value="item.linkId = 'admittedHCFName'"/>
</source>
<rule>
<name value="set Hospital Name"/>
<source>
<context value="admittedHCFName"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmClinical"/>
<contextType value="variable"/>
<element value="HospitalName"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="outcome"/>
<condition value="item.linkId = 'outcome'"/>
</source>
<rule>
<name value="set Outcome"/>
<source>
<context value="outcome"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmClinical"/>
<contextType value="variable"/>
<element value="Outcome"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="answer"/>
<condition value="item.linkId = 'travelledOutside'"/>
</source>
<rule>
<name value="set specify virus"/>
<source>
<context value="answer"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmClinical"/>
<contextType value="variable"/>
<element value="travelledOutside"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="answer"/>
<condition value="item.linkId = 'infectionSetting'"/>
</source>
<rule>
<name value="set specify virus"/>
<source>
<context value="answer"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmClinical"/>
<contextType value="variable"/>
<element value="specifyInfectionSetting"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
</rule>
</group>
<group>
<name value="mapLaboratoryResults"/>
<typeMode value="none"/>
<input>
<name value="qrLaboratoryResults"/>
<mode value="source"/>
</input>
<input>
<name value="lmLaboratoryResults"/>
<type value="LaboratoryResultsLogicalModel"/>
<mode value="target"/>
</input>
<rule>
<name value="set labs"/>
<source>
<context value="qrLaboratoryResults"/>
<element value="item"/>
<variable value="item"/>
</source>
<rule>
<name value="set"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="answer"/>
<condition value="item.linkId = 'sampleType'"/>
</source>
<rule>
<name value="set SampleType"/>
<source>
<context value="answer"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmLaboratoryResults"/>
<contextType value="variable"/>
<element value="SampleType"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="answer"/>
<condition value="item.linkId = 'collectionDate'"/>
</source>
<rule>
<name value="set SpecimenCollectionDate"/>
<source>
<context value="answer"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmLaboratoryResults"/>
<contextType value="variable"/>
<element value="SpecimenCollectionDate"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="answer"/>
<condition value="item.linkId = 'labName'"/>
</source>
<rule>
<name value="set Shipment Date"/>
<source>
<context value="answer"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmLaboratoryResults"/>
<contextType value="variable"/>
<element value="LabName"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="answer"/>
<condition value="item.linkId = 'specimenSentDate'"/>
</source>
<rule>
<name value="set SpecimenSentDate"/>
<source>
<context value="answer"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmLaboratoryResults"/>
<contextType value="variable"/>
<element value="SpecimenSentDate"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="answer"/>
<condition value="item.linkId = 'specimenReceivedDate'"/>
</source>
<rule>
<name value="set SpecimenRecdDate"/>
<source>
<context value="answer"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmLaboratoryResults"/>
<contextType value="variable"/>
<element value="SpecimenRecdDate"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="answer"/>
<condition value="item.linkId = 'testPerformed'"/>
</source>
<rule>
<name value="set TypeOfTest"/>
<source>
<context value="answer"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmLaboratoryResults"/>
<contextType value="variable"/>
<element value="TypeOfTest"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="answer"/>
<condition value="item.linkId = 'result'"/>
</source>
<rule>
<name value="set Results"/>
<source>
<context value="answer"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmLaboratoryResults"/>
<contextType value="variable"/>
<element value="Results"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="answer"/>
<condition value="item.linkId = 'specifyVirus'"/>
</source>
<rule>
<name value="set specify virus"/>
<source>
<context value="answer"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmLaboratoryResults"/>
<contextType value="variable"/>
<element value="ViralGenotype"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
</rule>
</group>
<group>
<name value="mapCaseInvestigation"/>
<typeMode value="none"/>
<input>
<name value="qrCaseInvestigation"/>
<mode value="source"/>
</input>
<input>
<name value="lmCaseInvestigation"/>
<type value="SOTMeaslesCaseInvestigation"/>
<mode value="target"/>
</input>
<rule>
<name value="set contact tracing"/>
<source>
<context value="qrCaseInvestigation"/>
<element value="item"/>
<variable value="item"/>
</source>
<rule>
<name value="set date of consultation"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="dateOfConsultation"/>
<condition value="item.linkId = 'DateOfConsultation'"/>
</source>
<rule>
<name value="set date of consultation"/>
<source>
<context value="dateOfConsultation"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmReportingSource"/>
<contextType value="variable"/>
<element value="DateOfConsultation"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set date reported local"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="dateReportedLocal"/>
<condition value="item.linkId = 'dateReported'"/>
</source>
<rule>
<name value="set date reported local"/>
<source>
<context value="dateReportedLocal"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmReportingSource"/>
<contextType value="variable"/>
<element value="DateReportedLocal"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="rashOnsetDate"/>
<condition value="item.linkId = 'rashOnsetDate'"/>
</source>
<rule>
<name value="set Rash Onset Date"/>
<source>
<context value="rashOnsetDate"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmClinical"/>
<contextType value="variable"/>
<element value="RashOnsetDate"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
</rule>
</group>
<group>
<name value="mapClassification"/>
<typeMode value="none"/>
<input>
<name value="qrClassification"/>
<mode value="source"/>
</input>
<input>
<name value="lmClassification"/>
<type value="ClassificationLogicalModel"/>
<mode value="target"/>
</input>
<rule>
<name value="set classification"/>
<source>
<context value="qrClassification"/>
<element value="item"/>
<variable value="item"/>
</source>
<rule>
<name value="set"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="answer"/>
<condition value="item.linkId = 'finalClassification'"/>
</source>
<rule>
<name value="set finalClassification"/>
<source>
<context value="answer"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmClassification"/>
<contextType value="variable"/>
<element value="FinalClassification"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="set case ID"/>
<source>
<context value="item"/>
<element value="answer"/>
<listMode value="first"/>
<variable value="reportedBy"/>
<condition value="item.linkId = 'reportedBy'"/>
</source>
<rule>
<name value="set case ID"/>
<source>
<context value="reportedBy"/>
<element value="value"/>
<variable value="value"/>
</source>
<target>
<context value="lmClassification"/>
<contextType value="variable"/>
<element value="ReportedBy"/>
<transform value="copy"/>
<parameter>
<valueId value="value"/>
</parameter>
</target>
</rule>
</rule>
</rule>
</group>
</StructureMap>
IG © 2021+ WHO. Package fhir.worldhealthorganization.smart-ot#0.2.1 based on FHIR 4.0.1. Generated 2023-11-07
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