WHO SMART Guideline: Surveillance and Outbreak Toolkit
0.2.1 - CI Build
WHO SMART Guideline: Surveillance and Outbreak Toolkit
0.2.1 - CI Build
WHO SMART Guideline: Surveillance and Outbreak Toolkit, published by WHO. This is not an authorized publication; it is the continuous build for version 0.2.1. This version is based on the current content of https://github.com/WorldHealthOrganization/smart-ot and changes regularly. See the Directory of published versions
| Draft as of 2023-11-07 |
{
"resourceType" : "StructureMap",
"id" : "AFROMRCIFQuestionnaireToLogicalModel",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><pre class=\"fml\">\r\n<b>map</b><span style=\"color: navy\"> "</span>http://worldhealthorganization.github.io/smart-ot/StructureMap/AFROMRCIFQuestionnaireToLogicalModel<span style=\"color: navy\">" = "</span>AFROMRCIFQuestionnaireToLogicalModel<span style=\"color: navy\">"\r\n\r\n</span><b>uses</b><span style=\"color: navy\"> "</span><a href=\"http://hl7.org/fhir/R4/questionnaireresponse.html\" title=\"QuestionnaireResponse\">http://hl7.org/fhir/StructureDefinition/QuestionnaireResponse</a><span style=\"color: navy\">" </span><b>alias </b>QuestionnaireResponse <b>as </b><b>source</b>\r\n<b>uses</b><span style=\"color: navy\"> "</span><a href=\"StructureDefinition-AFROMRCIF.html\" title=\"Surveillance & Outbreak Toolkit - AFRO MRCIF\">http://worldhealthorganization.github.io/smart-ot/StructureDefinition/AFROMRCIF</a><span style=\"color: navy\">" </span><b>alias </b>MeaslesLogicalModel <b>as </b><b>target</b>\r\n\r\n<b>group </b>MRCIFQuestionnaireToLogicalModel<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">qr</span><span style=\"color: navy\"> : </span>QuestionnaireResponse, <b>target</b> <span style=\"color: maroon\">measlesLm</span><span style=\"color: navy\"> : </span>AFROMRCIF<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> qr.item<b> as </b><span style=\"color: maroon\">item</span><b> where </b>linkId.value in ('investigationForm')<span style=\"color: navy\"><b> -> </b></span><span style=\"color: maroon\">measlesLm</span><b> as </b><span style=\"color: maroon\">measlesLm</span><b> then </b>mapInvestigationForm<span style=\"color: navy\">(</span><span style=\"color: maroon\">item</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">measlesLm</span><span style=\"color: navy\">)</span> <i>"set Investigation form"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>mapInvestigationForm<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">investigationForm</span>, <b>target</b> <span style=\"color: maroon\">measlesLm</span><span style=\"color: navy\"> : </span>AFROMRCIF<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> investigationForm.item<b> as </b><span style=\"color: maroon\">qrReportingSource</span><b> where </b>linkId.value in ('reportingSource')<span style=\"color: navy\"><b> -> </b></span>measlesLm.ReportingSource<b> as </b><span style=\"color: maroon\">lmReportingSource</span><b> then </b>mapReportingSource<span style=\"color: navy\">(</span><span style=\"color: maroon\">qrReportingSource</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">lmReportingSource</span><span style=\"color: navy\">)</span> <i>"set Reporting Source"</i><span style=\"color: navy\">;</span>\r\n investigationForm.item<b> as </b><span style=\"color: maroon\">qrDemographics</span><b> where </b>linkId.value in ('demographics')<span style=\"color: navy\"><b> -> </b></span>measlesLm.Demographics<b> as </b><span style=\"color: maroon\">lmDemographics</span><b> then </b>mapDemographics<span style=\"color: navy\">(</span><span style=\"color: maroon\">qrDemographics</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">lmDemographics</span><span style=\"color: navy\">)</span> <i>"set Demographics"</i><span style=\"color: navy\">;</span>\r\n investigationForm.item<b> as </b><span style=\"color: maroon\">qrVaccinationStatus</span><b> where </b>linkId.value in ('vaccinationStatus')<span style=\"color: navy\"><b> -> </b></span>measlesLm.VaccinationStatus<b> as </b><span style=\"color: maroon\">lmVaccinationStatus</span><b> then </b>mapVaccinationStatus<span style=\"color: navy\">(</span><span style=\"color: maroon\">qrVaccinationStatus</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">lmVaccinationStatus</span><span style=\"color: navy\">)</span> <i>"set Vaccination Status"</i><span style=\"color: navy\">;</span>\r\n investigationForm.item<b> as </b><span style=\"color: maroon\">qrClinical</span><b> where </b>linkId.value in ('clinical')<span style=\"color: navy\"><b> -> </b></span>measlesLm.Clinical<b> as </b><span style=\"color: maroon\">lmClinical</span><b> then </b>mapClinical<span style=\"color: navy\">(</span><span style=\"color: maroon\">qrClinical</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">lmClinical</span><span style=\"color: navy\">)</span> <i>"set Clinical"</i><span style=\"color: navy\">;</span>\r\n investigationForm.item<b> as </b><span style=\"color: maroon\">qrLaboratoryResults</span><b> where </b>linkId.value in ('laboratoryResults')<span style=\"color: navy\"><b> -> </b></span>measlesLm.LaboratoryResults<b> as </b><span style=\"color: maroon\">lmLaboratoryResults</span><b> then </b>mapLaboratoryResults<span style=\"color: navy\">(</span><span style=\"color: maroon\">qrLaboratoryResults</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">lmLaboratoryResults</span><span style=\"color: navy\">)</span> <i>"set Laboratory Results"</i><span style=\"color: navy\">;</span>\r\n investigationForm.item<b> as </b><span style=\"color: maroon\">qrCaseInvestigation</span><b> where </b>linkId.value in ('qrCaseInvestigation')<span style=\"color: navy\"><b> -> </b></span>measlesLm.qrCaseInvestigation<b> as </b><span style=\"color: maroon\">lmCaseInvestigation</span><b> then </b>mapCaseInvestigation<span style=\"color: navy\">(</span><span style=\"color: maroon\">qrCaseInvestigation</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">lmCaseInvestigation</span><span style=\"color: navy\">)</span> <i>"set Contact Tracing"</i><span style=\"color: navy\">;</span>\r\n investigationForm.item<b> as </b><span style=\"color: maroon\">qrClassification</span><b> where </b>linkId.value in ('classification')<span style=\"color: navy\"><b> -> </b></span>measlesLm.Classification<b> as </b><span style=\"color: maroon\">lmClassification</span><b> then </b>mapClassification<span style=\"color: navy\">(</span><span style=\"color: maroon\">qrClassification</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">lmClassification</span><span style=\"color: navy\">)</span> <i>"set Classification"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>mapReportingSource<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">qrReportingSource</span>, <b>target</b> <span style=\"color: maroon\">lmReportingSource</span><span style=\"color: navy\"> : </span>SOTMeaslesReportingSource<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> qrReportingSource.item<b> as </b><span style=\"color: maroon\">item</span><b> then</b><span style=\"color: navy\"> {\r\n</span> item.answer first<b> as </b><span style=\"color: maroon\">caseId</span><b> where </b>item.linkId = 'caseID'<b> then</b><span style=\"color: navy\"> {\r\n</span> caseId.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmReportingSource.UniqueId = <span style=\"color: maroon\">value</span> <i>"set01"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set"</i><span style=\"color: navy\">;</span>\r\n qrReportingSource.item<b> as </b><span style=\"color: maroon\">qrReportingInstitution</span><b> where </b>linkId.value in ('reportingInstitution')<span style=\"color: navy\"><b> -> </b></span><span style=\"color: maroon\">lmReportingSource</span><b> as </b><span style=\"color: maroon\">lmReportingSource</span><b> then </b>mapReportingInstitution<span style=\"color: navy\">(</span><span style=\"color: maroon\">qrReportingInstitution</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">lmReportingSource</span><span style=\"color: navy\">)</span> <i>"set reporting institution"</i><span style=\"color: navy\">;</span>\r\n item.answer first<b> as </b><span style=\"color: maroon\">dateReportedNational</span><b> where </b>item.linkId = 'DateReportedNational'<b> then</b><span style=\"color: navy\"> {\r\n</span> dateReportedNational.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmReportingSource.DateReportedNational = <span style=\"color: maroon\">value</span> <i>"set date reported national"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set date reported national"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set reporting source"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>mapReportingInstitution<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">qrReportingInstitution</span>, <b>target</b> <span style=\"color: maroon\">lmReportingSource</span><span style=\"color: navy\"> : </span>SOTMeaslesReportingSource<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> qrReportingInstitution.item<b> as </b><span style=\"color: maroon\">item</span><b> then</b><span style=\"color: navy\"> {\r\n</span> item.answer first<b> as </b><span style=\"color: maroon\">reportingFacility</span><b> where </b>item.linkId = 'reportingFacility'<b> then</b><span style=\"color: navy\"> {\r\n</span> reportingFacility.value<b> as </b><span style=\"color: maroon\">healthFacilityName</span><span style=\"color: navy\"><b> -> </b></span>lmReportingSource.HealthServiceName = <span style=\"color: maroon\">healthFacilityName</span> <i>"set health facility name"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set health facility name"</i><span style=\"color: navy\">;</span>\r\n qrReportingInstitution<span style=\"color: navy\"><b> -> </b></span><b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Address'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">lmAddress</span><b> then</b><span style=\"color: navy\"> {\r\n</span> item.answer first<b> as </b><span style=\"color: maroon\">country</span><b> where </b>item.linkId = 'country'<b> then</b><span style=\"color: navy\"> {\r\n</span> country.value<b> as </b><span style=\"color: maroon\">countryValue</span><span style=\"color: navy\"><b> -> </b></span>lmAddress.country = <span style=\"color: maroon\">countryValue</span> <i>"set country"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set country"</i><span style=\"color: navy\">;</span>\r\n item.answer first<b> as </b><span style=\"color: maroon\">municipality</span><b> where </b>item.linkId = 'municipality'<b> then</b><span style=\"color: navy\"> {\r\n</span> municipality.value<b> as </b><span style=\"color: maroon\">cityValue</span><span style=\"color: navy\"><b> -> </b></span>lmAddress.city = <span style=\"color: maroon\">cityValue</span> <i>"set city"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set city "</i><span style=\"color: navy\">;</span>\r\n item.answer first<b> as </b><span style=\"color: maroon\">state</span><b> where </b>item.linkId = 'state'<b> then</b><span style=\"color: navy\"> {\r\n</span> state.value<b> as </b><span style=\"color: maroon\">stateValue</span><span style=\"color: navy\"><b> -> </b></span>lmAddress.state = <span style=\"color: maroon\">stateValue</span> <i>"set state"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set state"</i><span style=\"color: navy\">;</span>\r\n item.answer first<b> as </b><span style=\"color: maroon\">locality</span><b> where </b>item.linkId = 'locality'<b> then</b><span style=\"color: navy\"> {\r\n</span> locality.value<b> as </b><span style=\"color: maroon\">localityValue</span><span style=\"color: navy\"><b> -> </b></span>lmAddress.line = <span style=\"color: maroon\">localityValue</span> <i>"set locality"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set locality"</i><span style=\"color: navy\">;</span>\r\n qrReportingInstitution<span style=\"color: navy\"><b> -> </b></span>lmReportingSource.PlaceOfReporting = <span style=\"color: maroon\">lmAddress</span> <i>"assign address"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set address"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set reporting institution"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>mapDemographics<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">qrDemographics</span>, <b>target</b> <span style=\"color: maroon\">lmDemographics</span><span style=\"color: navy\"> : </span>SOTMeaslesDemographic<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> qrDemographics.item<b> as </b><span style=\"color: maroon\">item</span><b> then</b><span style=\"color: navy\"> {\r\n</span> item.answer first<b> as </b><span style=\"color: maroon\">name</span><b> where </b>item.linkId = 'name'<b> then</b><span style=\"color: navy\"> {\r\n</span> name.value<b> as </b><span style=\"color: maroon\">nameValue</span><span style=\"color: navy\"><b> -> </b></span> <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'HumanName'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">lmName</span><span style=\"color: navy\">, </span> lmName.family = <span style=\"color: maroon\">nameValue</span><span style=\"color: navy\">, </span> lmDemographics.Name = <span style=\"color: maroon\">lmName</span> <i>"set name"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set name"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">adapt address to be separate mappings</span>\r\n item.answer first<b> as </b><span style=\"color: maroon\">address</span><b> where </b>item.linkId = 'address'<b> then</b><span style=\"color: navy\"> {\r\n</span> address.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span> <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Address'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">lmAddress</span><span style=\"color: navy\">, </span> lmAddress.text = <span style=\"color: maroon\">value</span><span style=\"color: navy\">, </span> lmDemographics.PlaceOfResidence = <span style=\"color: maroon\">lmAddress</span> <i>"set address"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set address"</i><span style=\"color: navy\">;</span>\r\n item.answer first<b> as </b><span style=\"color: maroon\">location</span><b> where </b>item.linkId = 'localityType'<b> then</b><span style=\"color: navy\"> {\r\n</span> location.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmDemographics.LocalityType = <span style=\"color: maroon\">value</span> <i>"set Locality Type"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set Locality Type"</i><span style=\"color: navy\">;</span>\r\n item.answer first<b> as </b><span style=\"color: maroon\">sex</span><b> where </b>item.linkId = 'sex'<b> then</b><span style=\"color: navy\"> {\r\n</span> sex.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmDemographics.Sex = <span style=\"color: maroon\">value</span> <i>"set sex"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set sex"</i><span style=\"color: navy\">;</span>\r\n item.answer first<b> as </b><span style=\"color: maroon\">DoB</span><b> where </b>item.linkId = 'DoB'<b> then</b><span style=\"color: navy\"> {\r\n</span> DoB.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmDemographics.DateOfBirth = <span style=\"color: maroon\">value</span> <i>"set DoB"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set DoB"</i><span style=\"color: navy\">;</span>\r\n item.answer first<b> as </b><span style=\"color: maroon\">ageOnset</span><b> where </b>item.linkId = 'ageOnset'<b> then</b><span style=\"color: navy\"> {\r\n</span> ageOnset.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span> <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Quantity'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">lmAgeOnset</span><span style=\"color: navy\">, </span> lmAgeOnset.value = <span style=\"color: maroon\">value</span><span style=\"color: navy\">, </span> lmDemographics.Age = <span style=\"color: maroon\">lmAgeOnset</span> <i>"set ageOnset"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set ageOnset"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set demographics"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>mapVaccinationStatus<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">qrVaccinationStatus</span>, <b>target</b> <span style=\"color: maroon\">lmVaccinationStatus</span><span style=\"color: navy\"> : </span>SOTMeaslesVaccinationStatus<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> qrVaccinationStatus.item<b> as </b><span style=\"color: maroon\">item</span><b> then</b><span style=\"color: navy\"> {\r\n</span> item.answer first<b> as </b><span style=\"color: maroon\">lastDoseDate</span><b> where </b>item.linkId = 'lastDoseDate'<b> then</b><span style=\"color: navy\"> {\r\n</span> lastDoseDate.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmVaccinationStatus.LastDoseDate = <span style=\"color: maroon\">value</span> <i>"set Last Dose Date"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set last dose date"</i><span style=\"color: navy\">;</span>\r\n item.answer first<b> as </b><span style=\"color: maroon\">noOfDoses</span><b> where </b>item.linkId = 'noOfDoses'<b> then</b><span style=\"color: navy\"> {\r\n</span> noOfDoses.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmVaccinationStatus.NumberOfDoses = <span style=\"color: maroon\">value</span> <i>"set number of doses"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set"</i><span style=\"color: navy\">;</span>\r\n item.answer first<b> as </b><span style=\"color: maroon\">vaccineType</span><b> where </b>item.linkId = 'vaccineType'<b> then</b><span style=\"color: navy\"> {\r\n</span> vaccineType.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmVaccinationStatus.VaccineType = <span style=\"color: maroon\">value</span> <i>"set vaccine type"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>mapClinical<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">qrClinical</span>, <b>target</b> <span style=\"color: maroon\">lmClinical</span><span style=\"color: navy\"> : </span>SOTMeaslesClinical<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> qrClinical.item<b> as </b><span style=\"color: maroon\">item</span><b> then</b><span style=\"color: navy\"> {\r\n</span> item.answer first<b> as </b><span style=\"color: maroon\">fever</span><b> where </b>item.linkId = 'fever'<b> then</b><span style=\"color: navy\"> {\r\n</span> fever.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmClinical.Fever = <span style=\"color: maroon\">value</span> <i>"set Fever"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set"</i><span style=\"color: navy\">;</span>\r\n item.answer first<b> as </b><span style=\"color: maroon\">rash</span><b> where </b>item.linkId = 'rash'<b> then</b><span style=\"color: navy\"> {\r\n</span> rash.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmClinical.Rash = <span style=\"color: maroon\">value</span> <i>"set Rash"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set"</i><span style=\"color: navy\">;</span>\r\n item.answer first<b> as </b><span style=\"color: maroon\">cough</span><b> where </b>item.linkId = 'cough'<b> then</b><span style=\"color: navy\"> {\r\n</span> cough.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmClinical.Cough = <span style=\"color: maroon\">value</span> <i>"set Cough"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set"</i><span style=\"color: navy\">;</span>\r\n item.answer first<b> as </b><span style=\"color: maroon\">conjunctivitis</span><b> where </b>item.linkId = 'conjunctivitis'<b> then</b><span style=\"color: navy\"> {\r\n</span> conjunctivitis.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmClinical.Conjunctivitis = <span style=\"color: maroon\">value</span> <i>"set Conjunctivitis"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set"</i><span style=\"color: navy\">;</span>\r\n item.answer first<b> as </b><span style=\"color: maroon\">coryza</span><b> where </b>item.linkId = 'coryza'<b> then</b><span style=\"color: navy\"> {\r\n</span> coryza.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmClinical.Coryza = <span style=\"color: maroon\">value</span> <i>"set Coryza"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set"</i><span style=\"color: navy\">;</span>\r\n item.answer first<b> as </b><span style=\"color: maroon\">lymphadenopathy</span><b> where </b>item.linkId = 'lymphadenopathy'<b> then</b><span style=\"color: navy\"> {\r\n</span> lymphadenopathy.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmClinical.Lymphadenopathy = <span style=\"color: maroon\">value</span> <i>"set Lymphadenopathy"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set"</i><span style=\"color: navy\">;</span>\r\n item.answer first<b> as </b><span style=\"color: maroon\">jointPain</span><b> where </b>item.linkId = 'jointPain'<b> then</b><span style=\"color: navy\"> {\r\n</span> jointPain.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmClinical.JointPain = <span style=\"color: maroon\">value</span> <i>"set Arthralgia"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set"</i><span style=\"color: navy\">;</span>\r\n item.answer first<b> as </b><span style=\"color: maroon\">admitted</span><b> where </b>item.linkId = 'admitted'<b> then</b><span style=\"color: navy\"> {\r\n</span> admitted.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmClinical.HistoryOfHospitalization = <span style=\"color: maroon\">value</span> <i>"set Hospitalized"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set"</i><span style=\"color: navy\">;</span>\r\n item.answer first<b> as </b><span style=\"color: maroon\">admittedHCFName</span><b> where </b>item.linkId = 'admittedHCFName'<b> then</b><span style=\"color: navy\"> {\r\n</span> admittedHCFName.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmClinical.HospitalName = <span style=\"color: maroon\">value</span> <i>"set Hospital Name"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set"</i><span style=\"color: navy\">;</span>\r\n item.answer first<b> as </b><span style=\"color: maroon\">outcome</span><b> where </b>item.linkId = 'outcome'<b> then</b><span style=\"color: navy\"> {\r\n</span> outcome.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmClinical.Outcome = <span style=\"color: maroon\">value</span> <i>"set Outcome"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set"</i><span style=\"color: navy\">;</span>\r\n item.answer first<b> as </b><span style=\"color: maroon\">answer</span><b> where </b>item.linkId = 'travelledOutside'<b> then</b><span style=\"color: navy\"> {\r\n</span> answer.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmClinical.travelledOutside = <span style=\"color: maroon\">value</span> <i>"set specify virus"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set"</i><span style=\"color: navy\">;</span>\r\n item.answer first<b> as </b><span style=\"color: maroon\">answer</span><b> where </b>item.linkId = 'infectionSetting'<b> then</b><span style=\"color: navy\"> {\r\n</span> answer.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmClinical.specifyInfectionSetting = <span style=\"color: maroon\">value</span> <i>"set specify virus"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set clinical"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>mapLaboratoryResults<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">qrLaboratoryResults</span>, <b>target</b> <span style=\"color: maroon\">lmLaboratoryResults</span><span style=\"color: navy\"> : </span>LaboratoryResultsLogicalModel<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> qrLaboratoryResults.item<b> as </b><span style=\"color: maroon\">item</span><b> then</b><span style=\"color: navy\"> {\r\n</span> item.answer first<b> as </b><span style=\"color: maroon\">answer</span><b> where </b>item.linkId = 'sampleType'<b> then</b><span style=\"color: navy\"> {\r\n</span> answer.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmLaboratoryResults.SampleType = <span style=\"color: maroon\">value</span> <i>"set SampleType"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set"</i><span style=\"color: navy\">;</span>\r\n item.answer first<b> as </b><span style=\"color: maroon\">answer</span><b> where </b>item.linkId = 'collectionDate'<b> then</b><span style=\"color: navy\"> {\r\n</span> answer.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmLaboratoryResults.SpecimenCollectionDate = <span style=\"color: maroon\">value</span> <i>"set SpecimenCollectionDate"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set"</i><span style=\"color: navy\">;</span>\r\n item.answer first<b> as </b><span style=\"color: maroon\">answer</span><b> where </b>item.linkId = 'labName'<b> then</b><span style=\"color: navy\"> {\r\n</span> answer.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmLaboratoryResults.LabName = <span style=\"color: maroon\">value</span> <i>"set Shipment Date"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set"</i><span style=\"color: navy\">;</span>\r\n item.answer first<b> as </b><span style=\"color: maroon\">answer</span><b> where </b>item.linkId = 'specimenSentDate'<b> then</b><span style=\"color: navy\"> {\r\n</span> answer.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmLaboratoryResults.SpecimenSentDate = <span style=\"color: maroon\">value</span> <i>"set SpecimenSentDate"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set"</i><span style=\"color: navy\">;</span>\r\n item.answer first<b> as </b><span style=\"color: maroon\">answer</span><b> where </b>item.linkId = 'specimenReceivedDate'<b> then</b><span style=\"color: navy\"> {\r\n</span> answer.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmLaboratoryResults.SpecimenRecdDate = <span style=\"color: maroon\">value</span> <i>"set SpecimenRecdDate"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set"</i><span style=\"color: navy\">;</span>\r\n item.answer first<b> as </b><span style=\"color: maroon\">answer</span><b> where </b>item.linkId = 'testPerformed'<b> then</b><span style=\"color: navy\"> {\r\n</span> answer.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmLaboratoryResults.TypeOfTest = <span style=\"color: maroon\">value</span> <i>"set TypeOfTest"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set"</i><span style=\"color: navy\">;</span>\r\n item.answer first<b> as </b><span style=\"color: maroon\">answer</span><b> where </b>item.linkId = 'result'<b> then</b><span style=\"color: navy\"> {\r\n</span> answer.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmLaboratoryResults.Results = <span style=\"color: maroon\">value</span> <i>"set Results"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set"</i><span style=\"color: navy\">;</span>\r\n item.answer first<b> as </b><span style=\"color: maroon\">answer</span><b> where </b>item.linkId = 'specifyVirus'<b> then</b><span style=\"color: navy\"> {\r\n</span> answer.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmLaboratoryResults.ViralGenotype = <span style=\"color: maroon\">value</span> <i>"set specify virus"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set labs"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>mapCaseInvestigation<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">qrCaseInvestigation</span>, <b>target</b> <span style=\"color: maroon\">lmCaseInvestigation</span><span style=\"color: navy\"> : </span>SOTMeaslesCaseInvestigation<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> qrCaseInvestigation.item<b> as </b><span style=\"color: maroon\">item</span><b> then</b><span style=\"color: navy\"> {\r\n</span> item.answer first<b> as </b><span style=\"color: maroon\">dateOfConsultation</span><b> where </b>item.linkId = 'DateOfConsultation'<b> then</b><span style=\"color: navy\"> {\r\n</span> dateOfConsultation.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmReportingSource.DateOfConsultation = <span style=\"color: maroon\">value</span> <i>"set date of consultation"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set date of consultation"</i><span style=\"color: navy\">;</span>\r\n item.answer first<b> as </b><span style=\"color: maroon\">dateReportedLocal</span><b> where </b>item.linkId = 'dateReported'<b> then</b><span style=\"color: navy\"> {\r\n</span> dateReportedLocal.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmReportingSource.DateReportedLocal = <span style=\"color: maroon\">value</span> <i>"set date reported local"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set date reported local"</i><span style=\"color: navy\">;</span>\r\n item.answer first<b> as </b><span style=\"color: maroon\">rashOnsetDate</span><b> where </b>item.linkId = 'rashOnsetDate'<b> then</b><span style=\"color: navy\"> {\r\n</span> rashOnsetDate.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmClinical.RashOnsetDate = <span style=\"color: maroon\">value</span> <i>"set Rash Onset Date"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set contact tracing"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>mapClassification<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">qrClassification</span>, <b>target</b> <span style=\"color: maroon\">lmClassification</span><span style=\"color: navy\"> : </span>ClassificationLogicalModel<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> qrClassification.item<b> as </b><span style=\"color: maroon\">item</span><b> then</b><span style=\"color: navy\"> {\r\n</span> item.answer first<b> as </b><span style=\"color: maroon\">answer</span><b> where </b>item.linkId = 'finalClassification'<b> then</b><span style=\"color: navy\"> {\r\n</span> answer.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmClassification.FinalClassification = <span style=\"color: maroon\">value</span> <i>"set finalClassification"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set"</i><span style=\"color: navy\">;</span>\r\n item.answer first<b> as </b><span style=\"color: maroon\">reportedBy</span><b> where </b>item.linkId = 'reportedBy'<b> then</b><span style=\"color: navy\"> {\r\n</span> reportedBy.value<b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\"><b> -> </b></span>lmClassification.ReportedBy = <span style=\"color: maroon\">value</span> <i>"set case ID"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set case ID"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"set classification"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span></pre></div>"
},
"url" : "http://worldhealthorganization.github.io/smart-ot/StructureMap/AFROMRCIFQuestionnaireToLogicalModel",
"version" : "0.2.1",
"name" : "AFROMRCIFQuestionnaireToLogicalModel",
"status" : "draft",
"date" : "2023-11-07T05:59:29+00:00",
"publisher" : "WHO",
"contact" : [
{
"name" : "WHO",
"telecom" : [
{
"system" : "url",
"value" : "http://who.int"
}
]
}
],
"jurisdiction" : [
{
"coding" : [
{
"system" : "http://unstats.un.org/unsd/methods/m49/m49.htm",
"code" : "001"
}
]
}
],
"structure" : [
{
"url" : "http://hl7.org/fhir/StructureDefinition/QuestionnaireResponse",
"mode" : "source",
"alias" : "QuestionnaireResponse"
},
{
"url" : "http://worldhealthorganization.github.io/smart-ot/StructureDefinition/AFROMRCIF",
"mode" : "target",
"alias" : "MeaslesLogicalModel"
}
],
"group" : [
{
"name" : "MRCIFQuestionnaireToLogicalModel",
"typeMode" : "none",
"input" : [
{
"name" : "qr",
"type" : "QuestionnaireResponse",
"mode" : "source"
},
{
"name" : "measlesLm",
"type" : "AFROMRCIF",
"mode" : "target"
}
],
"rule" : [
{
"name" : "set Investigation form",
"source" : [
{
"context" : "qr",
"element" : "item",
"variable" : "item",
"condition" : "linkId.value in ('investigationForm')"
}
],
"target" : [
{
"contextType" : "variable",
"variable" : "measlesLm",
"transform" : "copy",
"parameter" : [
{
"valueId" : "measlesLm"
}
]
}
],
"dependent" : [
{
"name" : "mapInvestigationForm",
"variable" : [
"item",
"measlesLm"
]
}
]
}
]
},
{
"name" : "mapInvestigationForm",
"typeMode" : "none",
"input" : [
{
"name" : "investigationForm",
"mode" : "source"
},
{
"name" : "measlesLm",
"type" : "AFROMRCIF",
"mode" : "target"
}
],
"rule" : [
{
"name" : "set Reporting Source",
"source" : [
{
"context" : "investigationForm",
"element" : "item",
"variable" : "qrReportingSource",
"condition" : "linkId.value in ('reportingSource')"
}
],
"target" : [
{
"context" : "measlesLm",
"contextType" : "variable",
"element" : "ReportingSource",
"variable" : "lmReportingSource"
}
],
"dependent" : [
{
"name" : "mapReportingSource",
"variable" : [
"qrReportingSource",
"lmReportingSource"
]
}
]
},
{
"name" : "set Demographics",
"source" : [
{
"context" : "investigationForm",
"element" : "item",
"variable" : "qrDemographics",
"condition" : "linkId.value in ('demographics')"
}
],
"target" : [
{
"context" : "measlesLm",
"contextType" : "variable",
"element" : "Demographics",
"variable" : "lmDemographics"
}
],
"dependent" : [
{
"name" : "mapDemographics",
"variable" : [
"qrDemographics",
"lmDemographics"
]
}
]
},
{
"name" : "set Vaccination Status",
"source" : [
{
"context" : "investigationForm",
"element" : "item",
"variable" : "qrVaccinationStatus",
"condition" : "linkId.value in ('vaccinationStatus')"
}
],
"target" : [
{
"context" : "measlesLm",
"contextType" : "variable",
"element" : "VaccinationStatus",
"variable" : "lmVaccinationStatus"
}
],
"dependent" : [
{
"name" : "mapVaccinationStatus",
"variable" : [
"qrVaccinationStatus",
"lmVaccinationStatus"
]
}
]
},
{
"name" : "set Clinical",
"source" : [
{
"context" : "investigationForm",
"element" : "item",
"variable" : "qrClinical",
"condition" : "linkId.value in ('clinical')"
}
],
"target" : [
{
"context" : "measlesLm",
"contextType" : "variable",
"element" : "Clinical",
"variable" : "lmClinical"
}
],
"dependent" : [
{
"name" : "mapClinical",
"variable" : [
"qrClinical",
"lmClinical"
]
}
]
},
{
"name" : "set Laboratory Results",
"source" : [
{
"context" : "investigationForm",
"element" : "item",
"variable" : "qrLaboratoryResults",
"condition" : "linkId.value in ('laboratoryResults')"
}
],
"target" : [
{
"context" : "measlesLm",
"contextType" : "variable",
"element" : "LaboratoryResults",
"variable" : "lmLaboratoryResults"
}
],
"dependent" : [
{
"name" : "mapLaboratoryResults",
"variable" : [
"qrLaboratoryResults",
"lmLaboratoryResults"
]
}
]
},
{
"name" : "set Contact Tracing",
"source" : [
{
"context" : "investigationForm",
"element" : "item",
"variable" : "qrCaseInvestigation",
"condition" : "linkId.value in ('qrCaseInvestigation')"
}
],
"target" : [
{
"context" : "measlesLm",
"contextType" : "variable",
"element" : "qrCaseInvestigation",
"variable" : "lmCaseInvestigation"
}
],
"dependent" : [
{
"name" : "mapCaseInvestigation",
"variable" : [
"qrCaseInvestigation",
"lmCaseInvestigation"
]
}
]
},
{
"name" : "set Classification",
"source" : [
{
"context" : "investigationForm",
"element" : "item",
"variable" : "qrClassification",
"condition" : "linkId.value in ('classification')"
}
],
"target" : [
{
"context" : "measlesLm",
"contextType" : "variable",
"element" : "Classification",
"variable" : "lmClassification"
}
],
"dependent" : [
{
"name" : "mapClassification",
"variable" : [
"qrClassification",
"lmClassification"
]
}
]
}
]
},
{
"name" : "mapReportingSource",
"typeMode" : "none",
"input" : [
{
"name" : "qrReportingSource",
"mode" : "source"
},
{
"name" : "lmReportingSource",
"type" : "SOTMeaslesReportingSource",
"mode" : "target"
}
],
"rule" : [
{
"name" : "set reporting source",
"source" : [
{
"context" : "qrReportingSource",
"element" : "item",
"variable" : "item"
}
],
"rule" : [
{
"name" : "set",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "caseId",
"condition" : "item.linkId = 'caseID'"
}
],
"rule" : [
{
"name" : "set01",
"source" : [
{
"context" : "caseId",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmReportingSource",
"contextType" : "variable",
"element" : "UniqueId",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
},
{
"name" : "set reporting institution",
"source" : [
{
"context" : "qrReportingSource",
"element" : "item",
"variable" : "qrReportingInstitution",
"condition" : "linkId.value in ('reportingInstitution')"
}
],
"target" : [
{
"contextType" : "variable",
"variable" : "lmReportingSource",
"transform" : "copy",
"parameter" : [
{
"valueId" : "lmReportingSource"
}
]
}
],
"dependent" : [
{
"name" : "mapReportingInstitution",
"variable" : [
"qrReportingInstitution",
"lmReportingSource"
]
}
]
},
{
"name" : "set date reported national",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "dateReportedNational",
"condition" : "item.linkId = 'DateReportedNational'"
}
],
"rule" : [
{
"name" : "set date reported national",
"source" : [
{
"context" : "dateReportedNational",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmReportingSource",
"contextType" : "variable",
"element" : "DateReportedNational",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
}
]
}
]
},
{
"name" : "mapReportingInstitution",
"typeMode" : "none",
"input" : [
{
"name" : "qrReportingInstitution",
"mode" : "source"
},
{
"name" : "lmReportingSource",
"type" : "SOTMeaslesReportingSource",
"mode" : "target"
}
],
"rule" : [
{
"name" : "set reporting institution",
"source" : [
{
"context" : "qrReportingInstitution",
"element" : "item",
"variable" : "item"
}
],
"rule" : [
{
"name" : "set health facility name",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "reportingFacility",
"condition" : "item.linkId = 'reportingFacility'"
}
],
"rule" : [
{
"name" : "set health facility name",
"source" : [
{
"context" : "reportingFacility",
"element" : "value",
"variable" : "healthFacilityName"
}
],
"target" : [
{
"context" : "lmReportingSource",
"contextType" : "variable",
"element" : "HealthServiceName",
"transform" : "copy",
"parameter" : [
{
"valueId" : "healthFacilityName"
}
]
}
]
}
]
},
{
"name" : "set address",
"source" : [
{
"context" : "qrReportingInstitution"
}
],
"target" : [
{
"contextType" : "variable",
"variable" : "lmAddress",
"transform" : "create",
"parameter" : [
{
"valueString" : "Address"
}
]
}
],
"rule" : [
{
"name" : "set country",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "country",
"condition" : "item.linkId = 'country'"
}
],
"rule" : [
{
"name" : "set country",
"source" : [
{
"context" : "country",
"element" : "value",
"variable" : "countryValue"
}
],
"target" : [
{
"context" : "lmAddress",
"contextType" : "variable",
"element" : "country",
"transform" : "copy",
"parameter" : [
{
"valueId" : "countryValue"
}
]
}
]
}
]
},
{
"name" : "set city ",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "municipality",
"condition" : "item.linkId = 'municipality'"
}
],
"rule" : [
{
"name" : "set city",
"source" : [
{
"context" : "municipality",
"element" : "value",
"variable" : "cityValue"
}
],
"target" : [
{
"context" : "lmAddress",
"contextType" : "variable",
"element" : "city",
"transform" : "copy",
"parameter" : [
{
"valueId" : "cityValue"
}
]
}
]
}
]
},
{
"name" : "set state",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "state",
"condition" : "item.linkId = 'state'"
}
],
"rule" : [
{
"name" : "set state",
"source" : [
{
"context" : "state",
"element" : "value",
"variable" : "stateValue"
}
],
"target" : [
{
"context" : "lmAddress",
"contextType" : "variable",
"element" : "state",
"transform" : "copy",
"parameter" : [
{
"valueId" : "stateValue"
}
]
}
]
}
]
},
{
"name" : "set locality",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "locality",
"condition" : "item.linkId = 'locality'"
}
],
"rule" : [
{
"name" : "set locality",
"source" : [
{
"context" : "locality",
"element" : "value",
"variable" : "localityValue"
}
],
"target" : [
{
"context" : "lmAddress",
"contextType" : "variable",
"element" : "line",
"transform" : "copy",
"parameter" : [
{
"valueId" : "localityValue"
}
]
}
]
}
]
},
{
"name" : "assign address",
"source" : [
{
"context" : "qrReportingInstitution"
}
],
"target" : [
{
"context" : "lmReportingSource",
"contextType" : "variable",
"element" : "PlaceOfReporting",
"transform" : "copy",
"parameter" : [
{
"valueId" : "lmAddress"
}
]
}
]
}
]
}
]
}
]
},
{
"name" : "mapDemographics",
"typeMode" : "none",
"input" : [
{
"name" : "qrDemographics",
"mode" : "source"
},
{
"name" : "lmDemographics",
"type" : "SOTMeaslesDemographic",
"mode" : "target"
}
],
"rule" : [
{
"name" : "set demographics",
"source" : [
{
"context" : "qrDemographics",
"element" : "item",
"variable" : "item"
}
],
"rule" : [
{
"name" : "set name",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "name",
"condition" : "item.linkId = 'name'"
}
],
"rule" : [
{
"name" : "set name",
"source" : [
{
"context" : "name",
"element" : "value",
"variable" : "nameValue"
}
],
"target" : [
{
"contextType" : "variable",
"variable" : "lmName",
"transform" : "create",
"parameter" : [
{
"valueString" : "HumanName"
}
]
},
{
"context" : "lmName",
"contextType" : "variable",
"element" : "family",
"transform" : "copy",
"parameter" : [
{
"valueId" : "nameValue"
}
]
},
{
"context" : "lmDemographics",
"contextType" : "variable",
"element" : "Name",
"transform" : "copy",
"parameter" : [
{
"valueId" : "lmName"
}
]
}
]
}
]
},
{
"name" : "set address",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "address",
"condition" : "item.linkId = 'address'"
}
],
"rule" : [
{
"name" : "set address",
"source" : [
{
"context" : "address",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"contextType" : "variable",
"variable" : "lmAddress",
"transform" : "create",
"parameter" : [
{
"valueString" : "Address"
}
]
},
{
"context" : "lmAddress",
"contextType" : "variable",
"element" : "text",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
},
{
"context" : "lmDemographics",
"contextType" : "variable",
"element" : "PlaceOfResidence",
"transform" : "copy",
"parameter" : [
{
"valueId" : "lmAddress"
}
]
}
]
}
]
},
{
"name" : "set Locality Type",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "location",
"condition" : "item.linkId = 'localityType'"
}
],
"rule" : [
{
"name" : "set Locality Type",
"source" : [
{
"context" : "location",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmDemographics",
"contextType" : "variable",
"element" : "LocalityType",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
},
{
"name" : "set sex",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "sex",
"condition" : "item.linkId = 'sex'"
}
],
"rule" : [
{
"name" : "set sex",
"source" : [
{
"context" : "sex",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmDemographics",
"contextType" : "variable",
"element" : "Sex",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
},
{
"name" : "set DoB",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "DoB",
"condition" : "item.linkId = 'DoB'"
}
],
"rule" : [
{
"name" : "set DoB",
"source" : [
{
"context" : "DoB",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmDemographics",
"contextType" : "variable",
"element" : "DateOfBirth",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
},
{
"name" : "set ageOnset",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "ageOnset",
"condition" : "item.linkId = 'ageOnset'"
}
],
"rule" : [
{
"name" : "set ageOnset",
"source" : [
{
"context" : "ageOnset",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"contextType" : "variable",
"variable" : "lmAgeOnset",
"transform" : "create",
"parameter" : [
{
"valueString" : "Quantity"
}
]
},
{
"context" : "lmAgeOnset",
"contextType" : "variable",
"element" : "value",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
},
{
"context" : "lmDemographics",
"contextType" : "variable",
"element" : "Age",
"transform" : "copy",
"parameter" : [
{
"valueId" : "lmAgeOnset"
}
]
}
]
}
]
}
]
}
]
},
{
"name" : "mapVaccinationStatus",
"typeMode" : "none",
"input" : [
{
"name" : "qrVaccinationStatus",
"mode" : "source"
},
{
"name" : "lmVaccinationStatus",
"type" : "SOTMeaslesVaccinationStatus",
"mode" : "target"
}
],
"rule" : [
{
"name" : "set",
"source" : [
{
"context" : "qrVaccinationStatus",
"element" : "item",
"variable" : "item"
}
],
"rule" : [
{
"name" : "set last dose date",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "lastDoseDate",
"condition" : "item.linkId = 'lastDoseDate'"
}
],
"rule" : [
{
"name" : "set Last Dose Date",
"source" : [
{
"context" : "lastDoseDate",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmVaccinationStatus",
"contextType" : "variable",
"element" : "LastDoseDate",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
},
{
"name" : "set",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "noOfDoses",
"condition" : "item.linkId = 'noOfDoses'"
}
],
"rule" : [
{
"name" : "set number of doses",
"source" : [
{
"context" : "noOfDoses",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmVaccinationStatus",
"contextType" : "variable",
"element" : "NumberOfDoses",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
},
{
"name" : "set",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "vaccineType",
"condition" : "item.linkId = 'vaccineType'"
}
],
"rule" : [
{
"name" : "set vaccine type",
"source" : [
{
"context" : "vaccineType",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmVaccinationStatus",
"contextType" : "variable",
"element" : "VaccineType",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
}
]
}
]
},
{
"name" : "mapClinical",
"typeMode" : "none",
"input" : [
{
"name" : "qrClinical",
"mode" : "source"
},
{
"name" : "lmClinical",
"type" : "SOTMeaslesClinical",
"mode" : "target"
}
],
"rule" : [
{
"name" : "set clinical",
"source" : [
{
"context" : "qrClinical",
"element" : "item",
"variable" : "item"
}
],
"rule" : [
{
"name" : "set",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "fever",
"condition" : "item.linkId = 'fever'"
}
],
"rule" : [
{
"name" : "set Fever",
"source" : [
{
"context" : "fever",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmClinical",
"contextType" : "variable",
"element" : "Fever",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
},
{
"name" : "set",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "rash",
"condition" : "item.linkId = 'rash'"
}
],
"rule" : [
{
"name" : "set Rash",
"source" : [
{
"context" : "rash",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmClinical",
"contextType" : "variable",
"element" : "Rash",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
},
{
"name" : "set",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "cough",
"condition" : "item.linkId = 'cough'"
}
],
"rule" : [
{
"name" : "set Cough",
"source" : [
{
"context" : "cough",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmClinical",
"contextType" : "variable",
"element" : "Cough",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
},
{
"name" : "set",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "conjunctivitis",
"condition" : "item.linkId = 'conjunctivitis'"
}
],
"rule" : [
{
"name" : "set Conjunctivitis",
"source" : [
{
"context" : "conjunctivitis",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmClinical",
"contextType" : "variable",
"element" : "Conjunctivitis",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
},
{
"name" : "set",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "coryza",
"condition" : "item.linkId = 'coryza'"
}
],
"rule" : [
{
"name" : "set Coryza",
"source" : [
{
"context" : "coryza",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmClinical",
"contextType" : "variable",
"element" : "Coryza",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
},
{
"name" : "set",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "lymphadenopathy",
"condition" : "item.linkId = 'lymphadenopathy'"
}
],
"rule" : [
{
"name" : "set Lymphadenopathy",
"source" : [
{
"context" : "lymphadenopathy",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmClinical",
"contextType" : "variable",
"element" : "Lymphadenopathy",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
},
{
"name" : "set",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "jointPain",
"condition" : "item.linkId = 'jointPain'"
}
],
"rule" : [
{
"name" : "set Arthralgia",
"source" : [
{
"context" : "jointPain",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmClinical",
"contextType" : "variable",
"element" : "JointPain",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
},
{
"name" : "set",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "admitted",
"condition" : "item.linkId = 'admitted'"
}
],
"rule" : [
{
"name" : "set Hospitalized",
"source" : [
{
"context" : "admitted",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmClinical",
"contextType" : "variable",
"element" : "HistoryOfHospitalization",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
},
{
"name" : "set",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "admittedHCFName",
"condition" : "item.linkId = 'admittedHCFName'"
}
],
"rule" : [
{
"name" : "set Hospital Name",
"source" : [
{
"context" : "admittedHCFName",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmClinical",
"contextType" : "variable",
"element" : "HospitalName",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
},
{
"name" : "set",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "outcome",
"condition" : "item.linkId = 'outcome'"
}
],
"rule" : [
{
"name" : "set Outcome",
"source" : [
{
"context" : "outcome",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmClinical",
"contextType" : "variable",
"element" : "Outcome",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
},
{
"name" : "set",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "answer",
"condition" : "item.linkId = 'travelledOutside'"
}
],
"rule" : [
{
"name" : "set specify virus",
"source" : [
{
"context" : "answer",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmClinical",
"contextType" : "variable",
"element" : "travelledOutside",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
},
{
"name" : "set",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "answer",
"condition" : "item.linkId = 'infectionSetting'"
}
],
"rule" : [
{
"name" : "set specify virus",
"source" : [
{
"context" : "answer",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmClinical",
"contextType" : "variable",
"element" : "specifyInfectionSetting",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
}
]
}
]
},
{
"name" : "mapLaboratoryResults",
"typeMode" : "none",
"input" : [
{
"name" : "qrLaboratoryResults",
"mode" : "source"
},
{
"name" : "lmLaboratoryResults",
"type" : "LaboratoryResultsLogicalModel",
"mode" : "target"
}
],
"rule" : [
{
"name" : "set labs",
"source" : [
{
"context" : "qrLaboratoryResults",
"element" : "item",
"variable" : "item"
}
],
"rule" : [
{
"name" : "set",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "answer",
"condition" : "item.linkId = 'sampleType'"
}
],
"rule" : [
{
"name" : "set SampleType",
"source" : [
{
"context" : "answer",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmLaboratoryResults",
"contextType" : "variable",
"element" : "SampleType",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
},
{
"name" : "set",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "answer",
"condition" : "item.linkId = 'collectionDate'"
}
],
"rule" : [
{
"name" : "set SpecimenCollectionDate",
"source" : [
{
"context" : "answer",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmLaboratoryResults",
"contextType" : "variable",
"element" : "SpecimenCollectionDate",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
},
{
"name" : "set",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "answer",
"condition" : "item.linkId = 'labName'"
}
],
"rule" : [
{
"name" : "set Shipment Date",
"source" : [
{
"context" : "answer",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmLaboratoryResults",
"contextType" : "variable",
"element" : "LabName",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
},
{
"name" : "set",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "answer",
"condition" : "item.linkId = 'specimenSentDate'"
}
],
"rule" : [
{
"name" : "set SpecimenSentDate",
"source" : [
{
"context" : "answer",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmLaboratoryResults",
"contextType" : "variable",
"element" : "SpecimenSentDate",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
},
{
"name" : "set",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "answer",
"condition" : "item.linkId = 'specimenReceivedDate'"
}
],
"rule" : [
{
"name" : "set SpecimenRecdDate",
"source" : [
{
"context" : "answer",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmLaboratoryResults",
"contextType" : "variable",
"element" : "SpecimenRecdDate",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
},
{
"name" : "set",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "answer",
"condition" : "item.linkId = 'testPerformed'"
}
],
"rule" : [
{
"name" : "set TypeOfTest",
"source" : [
{
"context" : "answer",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmLaboratoryResults",
"contextType" : "variable",
"element" : "TypeOfTest",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
},
{
"name" : "set",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "answer",
"condition" : "item.linkId = 'result'"
}
],
"rule" : [
{
"name" : "set Results",
"source" : [
{
"context" : "answer",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmLaboratoryResults",
"contextType" : "variable",
"element" : "Results",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
},
{
"name" : "set",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "answer",
"condition" : "item.linkId = 'specifyVirus'"
}
],
"rule" : [
{
"name" : "set specify virus",
"source" : [
{
"context" : "answer",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmLaboratoryResults",
"contextType" : "variable",
"element" : "ViralGenotype",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
}
]
}
]
},
{
"name" : "mapCaseInvestigation",
"typeMode" : "none",
"input" : [
{
"name" : "qrCaseInvestigation",
"mode" : "source"
},
{
"name" : "lmCaseInvestigation",
"type" : "SOTMeaslesCaseInvestigation",
"mode" : "target"
}
],
"rule" : [
{
"name" : "set contact tracing",
"source" : [
{
"context" : "qrCaseInvestigation",
"element" : "item",
"variable" : "item"
}
],
"rule" : [
{
"name" : "set date of consultation",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "dateOfConsultation",
"condition" : "item.linkId = 'DateOfConsultation'"
}
],
"rule" : [
{
"name" : "set date of consultation",
"source" : [
{
"context" : "dateOfConsultation",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmReportingSource",
"contextType" : "variable",
"element" : "DateOfConsultation",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
},
{
"name" : "set date reported local",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "dateReportedLocal",
"condition" : "item.linkId = 'dateReported'"
}
],
"rule" : [
{
"name" : "set date reported local",
"source" : [
{
"context" : "dateReportedLocal",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmReportingSource",
"contextType" : "variable",
"element" : "DateReportedLocal",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
},
{
"name" : "set",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "rashOnsetDate",
"condition" : "item.linkId = 'rashOnsetDate'"
}
],
"rule" : [
{
"name" : "set Rash Onset Date",
"source" : [
{
"context" : "rashOnsetDate",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmClinical",
"contextType" : "variable",
"element" : "RashOnsetDate",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
}
]
}
]
},
{
"name" : "mapClassification",
"typeMode" : "none",
"input" : [
{
"name" : "qrClassification",
"mode" : "source"
},
{
"name" : "lmClassification",
"type" : "ClassificationLogicalModel",
"mode" : "target"
}
],
"rule" : [
{
"name" : "set classification",
"source" : [
{
"context" : "qrClassification",
"element" : "item",
"variable" : "item"
}
],
"rule" : [
{
"name" : "set",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "answer",
"condition" : "item.linkId = 'finalClassification'"
}
],
"rule" : [
{
"name" : "set finalClassification",
"source" : [
{
"context" : "answer",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmClassification",
"contextType" : "variable",
"element" : "FinalClassification",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
},
{
"name" : "set case ID",
"source" : [
{
"context" : "item",
"element" : "answer",
"listMode" : "first",
"variable" : "reportedBy",
"condition" : "item.linkId = 'reportedBy'"
}
],
"rule" : [
{
"name" : "set case ID",
"source" : [
{
"context" : "reportedBy",
"element" : "value",
"variable" : "value"
}
],
"target" : [
{
"context" : "lmClassification",
"contextType" : "variable",
"element" : "ReportedBy",
"transform" : "copy",
"parameter" : [
{
"valueId" : "value"
}
]
}
]
}
]
}
]
}
]
}
]
}
IG © 2021+ WHO. Package fhir.worldhealthorganization.smart-ot#0.2.1 based on FHIR 4.0.1. Generated 2023-11-07
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