WHO SMART Guideline: Surveillance and Outbreak Toolkit, published by WHO. This is not an authorized publication; it is the continuous build for version 0.2.1. This version is based on the current content of https://github.com/WorldHealthOrganization/smart-ot and changes regularly. See the Directory of published versions

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{
  "resourceType" : "StructureMap",
  "id" : "AFROMRCIFLogicalModelToResources",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><pre class=\"fml\">\r\n<b>map</b><span style=\"color: navy\"> &quot;</span>http://worldhealthorganization.github.io/smart-ot/StructureMap/AFROMRCIFLogicalModelToResources<span style=\"color: navy\">&quot; = &quot;</span>AFROMRCIFLogicalModelToResources<span style=\"color: navy\">&quot;\r\n\r\n</span><b>uses</b><span style=\"color: navy\"> &quot;</span><a href=\"StructureDefinition-AFROMRCIF.html\" title=\"Surveillance &amp; Outbreak Toolkit - AFRO MRCIF\">http://worldhealthorganization.github.io/smart-ot/StructureDefinition/AFROMRCIF</a><span style=\"color: navy\">&quot; </span><b>alias </b>MeaslesLogicalModel <b>as </b><b>source</b>\r\n<b>uses</b><span style=\"color: navy\"> &quot;</span><a href=\"http://hl7.org/fhir/R4/bundle.html\" title=\"Bundle\">http://hl7.org/fhir/StructureDefinition/Bundle</a><span style=\"color: navy\">&quot; </span><b>alias </b>MeaslesCIFBundle <b>as </b><b>target</b>\r\n<b>uses</b><span style=\"color: navy\"> &quot;</span><a href=\"StructureDefinition-MeaslesCIFComposition.html\" title=\"Measles Case Investigation Form Composition\">http://worldhealthorganization.github.io/smart-ot/StructureDefinition/MeaslesCIFComposition</a><span style=\"color: navy\">&quot; </span><b>alias </b>MeaslesCIFComposition <b>as </b><b>target</b>\r\n\r\n<b>imports</b><span style=\"color: navy\"> &quot;</span><a href=\"StructureMap-MetaDataTypesHelper.html\" title=\"MetaDataTypesHelper\">http://worldhealthorganization.github.io/smart-ot/StructureMap/MetaDataTypesHelper</a><span style=\"color: navy\">&quot;\r\n</span>\r\n<b>group </b>MRCIFLogicalModelToResources<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">lm</span><span style=\"color: navy\"> : </span>AFROMRCIF, <b>target</b> <span style=\"color: maroon\">bundle</span><span style=\"color: navy\"> : </span>Bundle<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span>  lm<span style=\"color: navy\"><b> -&gt; </b></span>bundle.type = <span style=\"color: blue\">'document'</span> <i>&quot;set bundle type&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: #b36b00\" title=\"This element was not defined prior to R5\">// lm.ReportingSource as reportingSource then {     reportingSource.DateReportedNational as date -&gt; bundle.timestamp = date &quot;set date&quot;;   } &quot;set timestamp&quot;;</span>\r\n  lm<span style=\"color: navy\"><b> -&gt; </b></span> <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">bid</span><span style=\"color: navy\">, </span> bundle.id = <span style=\"color: maroon\">bid</span> <i>&quot;set id&quot;</i><span style=\"color: navy\">;</span>\r\n  lm<span style=\"color: navy\"><b> -&gt; </b></span> <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">cid</span><span style=\"color: navy\">, </span> <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">pid</span><span style=\"color: navy\">, </span> <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">prid</span><span style=\"color: navy\">, </span> <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">oid</span><span style=\"color: navy\">, </span> <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">eid</span><b> then</b><span style=\"color: navy\"> {\r\n</span>    lm<span style=\"color: navy\"><b> -&gt; </b></span> bundle.entry<b> as </b><span style=\"color: maroon\">entry</span><span style=\"color: navy\">, </span> entry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Composition'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">composition</span><span style=\"color: navy\">, </span> entry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'urn:uuid:'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">cid</span><span style=\"color: navy\">)</span><b> then</b><span style=\"color: navy\"> {\r\n</span>      lm<span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">lm</span><b> then </b>LmToComposition<span style=\"color: navy\">(</span><span style=\"color: maroon\">lm</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">composition</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">cid</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">prid</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">oid</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">eid</span><span style=\"color: navy\">)</span> <i>&quot;set&quot;</i><span style=\"color: navy\">;</span>\r\n      lm<span style=\"color: navy\"><b> -&gt; </b></span> bundle.entry<b> as </b><span style=\"color: maroon\">entry</span><span style=\"color: navy\">, </span> entry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'urn:uuid:'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Patient'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">patient</span><b> then</b><span style=\"color: navy\"> {\r\n</span>        lm.Demographics<b> as </b><span style=\"color: maroon\">demographics</span><span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">demographics</span><b> then </b>DemographicsToPatient<span style=\"color: navy\">(</span><span style=\"color: maroon\">demographics</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;create patient&quot;</i><span style=\"color: navy\">;</span>\r\n        lm<span style=\"color: navy\"><b> -&gt; </b></span>entry.resource = <span style=\"color: maroon\">patient</span> <i>&quot;set patient as entry&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;map patient resource&quot;</i><span style=\"color: navy\">;</span>\r\n      lm<span style=\"color: navy\"><b> -&gt; </b></span> bundle.entry<b> as </b><span style=\"color: maroon\">entry</span><span style=\"color: navy\">, </span> entry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'urn:uuid:'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">prid</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Practitioner'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">practitioner</span><b> then</b><span style=\"color: navy\"> {\r\n</span>        lm.Classification<b> as </b><span style=\"color: maroon\">classification</span><span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">classification</span><b> then </b>classificationToPractitioner<span style=\"color: navy\">(</span><span style=\"color: maroon\">classification</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">practitioner</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">prid</span><span style=\"color: navy\">)</span> <i>&quot;create practitioner&quot;</i><span style=\"color: navy\">;</span>\r\n        lm<span style=\"color: navy\"><b> -&gt; </b></span>entry.resource = <span style=\"color: maroon\">practitioner</span> <i>&quot;set practitioner as entry&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;map practitioner resource&quot;</i><span style=\"color: navy\">;</span>\r\n      lm<span style=\"color: navy\"><b> -&gt; </b></span> bundle.entry<b> as </b><span style=\"color: maroon\">entry</span><span style=\"color: navy\">, </span> entry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'urn:uuid:'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">oid</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Organization'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">organization</span><b> then</b><span style=\"color: navy\"> {\r\n</span>        lm.ReportingSource<b> as </b><span style=\"color: maroon\">reportingSource</span><span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">reportingSource</span><b> then </b>ReportingSourceToOrganization<span style=\"color: navy\">(</span><span style=\"color: maroon\">reportingSource</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">organization</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">oid</span><span style=\"color: navy\">)</span> <i>&quot;create organization&quot;</i><span style=\"color: navy\">;</span>\r\n        lm<span style=\"color: navy\"><b> -&gt; </b></span>entry.resource = <span style=\"color: maroon\">organization</span> <i>&quot;set organization as entry&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;map organization resource&quot;</i><span style=\"color: navy\">;</span>\r\n      lm<span style=\"color: navy\"><b> -&gt; </b></span> bundle.entry<b> as </b><span style=\"color: maroon\">entry</span><span style=\"color: navy\">, </span> entry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'urn:uuid:'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">eid</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Encounter'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">encounter</span><b> then</b><span style=\"color: navy\"> {\r\n</span>        lm.lmCaseInvestigation<b> as </b><span style=\"color: maroon\">var</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          var.DateOfConsultation<b> as </b><span style=\"color: maroon\">date</span><b> then</b><span style=\"color: navy\"> {\r\n</span>            date<span style=\"color: navy\"><b> -&gt; </b></span> <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">type</span><span style=\"color: navy\">, </span> type.code = <span style=\"color: blue\">'AMB'</span><span style=\"color: navy\">, </span> type.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/v3-ActCode'</span><span style=\"color: navy\">, </span> type.display = <span style=\"color: blue\">'ambulatory'</span><b> then </b>createCompositionEncounterResource<span style=\"color: navy\">(</span><span style=\"color: maroon\">date</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">type</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">eid</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">encounter</span><span style=\"color: navy\">)</span> <i>&quot;create encounter&quot;</i><span style=\"color: navy\">;</span>\r\n          <span style=\"color: navy\">}</span> <i>&quot;set encounter&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;set encounter&quot;</i><span style=\"color: navy\">;</span>\r\n        lm<span style=\"color: navy\"><b> -&gt; </b></span>entry.resource = <span style=\"color: maroon\">encounter</span> <i>&quot;set encounter as entry&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;map encounter resource&quot;</i><span style=\"color: navy\">;</span>\r\n      lm<span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">lm</span><b> then </b>mapClinicalToObservations<span style=\"color: navy\">(</span><span style=\"color: maroon\">lm</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">composition</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;set clinical data&quot;</i><span style=\"color: navy\">;</span>\r\n      lm<span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">lm</span><b> then </b>mapLabsToDiagnosticReport<span style=\"color: navy\">(</span><span style=\"color: maroon\">lm</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">composition</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;set labs data&quot;</i><span style=\"color: navy\">;</span>\r\n      lm<span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">lm</span><b> then </b>mapVaccinationStatusToImmunization<span style=\"color: navy\">(</span><span style=\"color: maroon\">lm</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">composition</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;set immunization data&quot;</i><span style=\"color: navy\">;</span>\r\n      lm<span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">lm</span><b> then </b>mapClassificationToConditions<span style=\"color: navy\">(</span><span style=\"color: maroon\">lm</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">composition</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">eid</span><span style=\"color: navy\">)</span> <i>&quot;set classification&quot;</i><span style=\"color: navy\">;</span>\r\n    <span style=\"color: navy\">}</span> <i>&quot;map composition resource&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span> <i>&quot;set entries&quot;</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>mapClassificationToConditions<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">lm</span><span style=\"color: navy\"> : </span>MeaslesLogicalModel, <b>target</b> <span style=\"color: maroon\">bundle</span><span style=\"color: navy\"> : </span>Bundle, <b>target</b> <span style=\"color: maroon\">composition</span><span style=\"color: navy\"> : </span>MeaslesCIFComposition, <b>source</b> <span style=\"color: maroon\">pid</span>, <b>source</b> <span style=\"color: maroon\">eid</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span>  lm<span style=\"color: navy\"><b> -&gt; </b></span> composition.section<b> as </b><span style=\"color: maroon\">section</span><span style=\"color: navy\">, </span> section.title = <span style=\"color: blue\">'Classification'</span><b> then</b><span style=\"color: navy\"> {\r\n</span>    lm.Classification<b> as </b><span style=\"color: maroon\">classification</span><span style=\"color: navy\"><b> -&gt; </b></span> <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">id</span><span style=\"color: navy\">, </span> bundle.entry<b> as </b><span style=\"color: maroon\">entry</span><span style=\"color: navy\">, </span> entry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'urn:uuid:'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">id</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> section.entry<b> as </b><span style=\"color: maroon\">sectionEntry</span><span style=\"color: navy\">, </span> sectionEntry.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Condition/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">id</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> entry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Condition'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">condition</span><b> then</b><span style=\"color: navy\"> {\r\n</span>      classification<span style=\"color: navy\"><b> -&gt; </b></span>condition.id = <span style=\"color: maroon\">id</span> <i>&quot;set id&quot;</i><span style=\"color: navy\">;</span>\r\n      classification<span style=\"color: navy\"><b> -&gt; </b></span> condition.verificationStatus<b> as </b><span style=\"color: maroon\">tgtStatus</span><span style=\"color: navy\">, </span> <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">status</span><span style=\"color: navy\">, </span> status.code = <span style=\"color: blue\">'confirmed'</span><span style=\"color: navy\">, </span> status.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/condition-ver-status'</span><span style=\"color: navy\">, </span> status.display = <span style=\"color: blue\">'Confirmed'</span><b> then </b>mapCodingtoCodeableConcept<span style=\"color: navy\">(</span><span style=\"color: maroon\">status</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">tgtStatus</span><span style=\"color: navy\">)</span> <i>&quot;set&quot;</i><span style=\"color: navy\">;</span>\r\n      classification<span style=\"color: navy\"><b> -&gt; </b></span> condition.subject<b> as </b><span style=\"color: maroon\">subject</span><span style=\"color: navy\">, </span> subject.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Patient/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;set subject&quot;</i><span style=\"color: navy\">;</span>\r\n      classification.FinalClassification<b> as </b><span style=\"color: maroon\">coding</span><span style=\"color: navy\"><b> -&gt; </b></span>condition.code<b> as </b><span style=\"color: maroon\">code</span><b> then </b>mapCodingtoCodeableConcept<span style=\"color: navy\">(</span><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">code</span><span style=\"color: navy\">)</span> <i>&quot;set code&quot;</i><span style=\"color: navy\">;</span>\r\n      classification<span style=\"color: navy\"><b> -&gt; </b></span> condition.encounter<b> as </b><span style=\"color: maroon\">encounter</span><span style=\"color: navy\">, </span> encounter.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Encounter/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">eid</span><span style=\"color: navy\">)</span> <i>&quot;set subject&quot;</i><span style=\"color: navy\">;</span>\r\n      classification<span style=\"color: navy\"><b> -&gt; </b></span> condition.category<b> as </b><span style=\"color: maroon\">tgt</span><span style=\"color: navy\">, </span> <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">status</span><span style=\"color: navy\">, </span> status.code = <span style=\"color: blue\">'encounter-diagnosis'</span><span style=\"color: navy\">, </span> status.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/condition-category'</span><span style=\"color: navy\">, </span> status.display = <span style=\"color: blue\">'Encounter Diagnosis'</span><b> then </b>mapCodingtoCodeableConcept<span style=\"color: navy\">(</span><span style=\"color: maroon\">status</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">tgt</span><span style=\"color: navy\">)</span> <i>&quot;set&quot;</i><span style=\"color: navy\">;</span>\r\n      classification.ClassificationDate<b> as </b><span style=\"color: maroon\">date</span><span style=\"color: navy\"><b> -&gt; </b></span>condition.recordedDate = <span style=\"color: maroon\">date</span> <i>&quot;set&quot;</i><span style=\"color: navy\">;</span>\r\n      classification.ClassifiedBy<b> as </b><span style=\"color: maroon\">person</span><span style=\"color: navy\"><b> -&gt; </b></span> <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">rpid</span><span style=\"color: navy\">, </span> bundle.entry<b> as </b><span style=\"color: maroon\">entry</span><span style=\"color: navy\">, </span> entry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'urn:uuid:'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">rpid</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> section.entry<b> as </b><span style=\"color: maroon\">sectionEntry</span><span style=\"color: navy\">, </span> sectionEntry.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'RelatedPerson/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">rpid</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> entry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'RelatedPerson'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">recorder</span><b> then</b><span style=\"color: navy\"> {\r\n</span>        person<span style=\"color: navy\"><b> -&gt; </b></span>recorder.id = <span style=\"color: maroon\">rpid</span> <i>&quot;set id&quot;</i><span style=\"color: navy\">;</span>\r\n        person<span style=\"color: navy\"><b> -&gt; </b></span> recorder.name<b> as </b><span style=\"color: maroon\">targetName</span><span style=\"color: navy\">, </span> <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'HumanName'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">name</span><span style=\"color: navy\">, </span> name.text = <span style=\"color: maroon\">person</span><b> then </b>humanNameToHumanName<span style=\"color: navy\">(</span><span style=\"color: maroon\">name</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">targetName</span><span style=\"color: navy\">)</span> <i>&quot;set&quot;</i><span style=\"color: navy\">;</span>\r\n        person<span style=\"color: navy\"><b> -&gt; </b></span> recorder.patient<b> as </b><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span> patient.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Patient/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;set patient&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;set person&quot;</i><span style=\"color: navy\">;</span>\r\n    <span style=\"color: navy\">}</span> <i>&quot;Set classification&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span> <i>&quot;set section&quot;</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>mapContactTracing<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">lm</span><span style=\"color: navy\"> : </span>MeaslesLogicalModel, <b>target</b> <span style=\"color: maroon\">bundle</span><span style=\"color: navy\"> : </span>Bundle, <b>target</b> <span style=\"color: maroon\">composition</span><span style=\"color: navy\"> : </span>MeaslesCIFComposition, <b>source</b> <span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span>  lm<span style=\"color: navy\"><b> -&gt; </b></span> composition.section<b> as </b><span style=\"color: maroon\">section</span><span style=\"color: navy\">, </span> section.title = <span style=\"color: blue\">'Contact Tracing'</span> <i>&quot;set&quot;</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>mapClinicalToObservations<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">lm</span><span style=\"color: navy\"> : </span>AFROMRCIF, <b>target</b> <span style=\"color: maroon\">bundle</span><span style=\"color: navy\"> : </span>Bundle, <b>target</b> <span style=\"color: maroon\">composition</span><span style=\"color: navy\"> : </span>Composition, <b>source</b> <span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span>  lm<span style=\"color: navy\"><b> -&gt; </b></span> composition.section<b> as </b><span style=\"color: maroon\">section</span><span style=\"color: navy\">, </span> section.title = <span style=\"color: blue\">'Clinical Data, Follow up and Treatment'</span><b> then</b><span style=\"color: navy\"> {\r\n</span>    lm.Clinical<b> as </b><span style=\"color: maroon\">clinical</span><span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">clinical</span><b> then</b><span style=\"color: navy\"> {\r\n</span>      clinical.Fever<b> as </b><span style=\"color: maroon\">fever</span><span style=\"color: navy\"><b> -&gt; </b></span> <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">, </span> bundle.entry<b> as </b><span style=\"color: maroon\">entry</span><span style=\"color: navy\">, </span> entry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'urn:uuid:'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> section.entry<b> as </b><span style=\"color: maroon\">sectionEntry</span><span style=\"color: navy\">, </span> sectionEntry.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> entry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">observation</span><b> then</b><span style=\"color: navy\"> {\r\n</span>        fever<span style=\"color: navy\"><b> -&gt; </b></span>observation.id = <span style=\"color: maroon\">obsid</span> <i>&quot;set obsid&quot;</i><span style=\"color: navy\">;</span>\r\n        fever<span style=\"color: navy\"><b> -&gt; </b></span> <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span> coding.code = <span style=\"color: blue\">'DE31'</span><span style=\"color: navy\">, </span> coding.system = <span style=\"color: blue\">'http://worldhealthorganization.github.io/smart-ot/AFROMRCIF'</span><span style=\"color: navy\">, </span> coding.display = <span style=\"color: blue\">'Fever'</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          fever<span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">fever</span><b> then </b>createObservationResource<span style=\"color: navy\">(</span><span style=\"color: maroon\">fever</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">observation</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;set obs&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;set obs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;set fever&quot;</i><span style=\"color: navy\">;</span>\r\n      clinical.Rash<b> as </b><span style=\"color: maroon\">rash</span><span style=\"color: navy\"><b> -&gt; </b></span> <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">, </span> bundle.entry<b> as </b><span style=\"color: maroon\">entry</span><span style=\"color: navy\">, </span> entry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'urn:uuid:'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> section.entry<b> as </b><span style=\"color: maroon\">sectionEntry</span><span style=\"color: navy\">, </span> sectionEntry.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> entry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">observation</span><b> then</b><span style=\"color: navy\"> {\r\n</span>        rash<span style=\"color: navy\"><b> -&gt; </b></span>observation.id = <span style=\"color: maroon\">obsid</span> <i>&quot;set obsid&quot;</i><span style=\"color: navy\">;</span>\r\n        rash<span style=\"color: navy\"><b> -&gt; </b></span> <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span> coding.code = <span style=\"color: blue\">'DE35'</span><span style=\"color: navy\">, </span> coding.system = <span style=\"color: blue\">'http://worldhealthorganization.github.io/smart-ot/AFROMRCIF'</span><span style=\"color: navy\">, </span> coding.display = <span style=\"color: blue\">'Rash'</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          rash<span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">rash</span><b> then </b>createObservationResource<span style=\"color: navy\">(</span><span style=\"color: maroon\">rash</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">observation</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;set obs&quot;</i><span style=\"color: navy\">;</span>\r\n          lm.lmCaseInvestigation<b> as </b><span style=\"color: maroon\">var</span><b> then</b><span style=\"color: navy\"> {\r\n</span>            var.RashOnsetDate<b> as </b><span style=\"color: maroon\">onsetDate</span><span style=\"color: navy\"><b> -&gt; </b></span> <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Period'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">period</span><span style=\"color: navy\">, </span> period.start = <span style=\"color: maroon\">onsetDate</span><span style=\"color: navy\">, </span> observation.effective = <span style=\"color: maroon\">period</span> <i>&quot;set start date&quot;</i><span style=\"color: navy\">;</span>\r\n          <span style=\"color: navy\">}</span> <i>&quot;set&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;set obs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;set Rash&quot;</i><span style=\"color: navy\">;</span>\r\n      clinical.Cough<b> as </b><span style=\"color: maroon\">cough</span><span style=\"color: navy\"><b> -&gt; </b></span> <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">, </span> bundle.entry<b> as </b><span style=\"color: maroon\">entry</span><span style=\"color: navy\">, </span> entry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'urn:uuid:'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> section.entry<b> as </b><span style=\"color: maroon\">sectionEntry</span><span style=\"color: navy\">, </span> sectionEntry.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> entry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">observation</span><b> then</b><span style=\"color: navy\"> {\r\n</span>        cough<span style=\"color: navy\"><b> -&gt; </b></span>observation.id = <span style=\"color: maroon\">obsid</span> <i>&quot;set obsid&quot;</i><span style=\"color: navy\">;</span>\r\n        cough<span style=\"color: navy\"><b> -&gt; </b></span> <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span> coding.code = <span style=\"color: blue\">'DE39'</span><span style=\"color: navy\">, </span> coding.system = <span style=\"color: blue\">'http://worldhealthorganization.github.io/smart-ot/AFROMRCIF'</span><span style=\"color: navy\">, </span> coding.display = <span style=\"color: blue\">'Cough'</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          cough<span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">cough</span><b> then </b>createObservationResource<span style=\"color: navy\">(</span><span style=\"color: maroon\">cough</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">observation</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;set obs&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;set obs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;set cough&quot;</i><span style=\"color: navy\">;</span>\r\n      clinical.Conjunctivitis<b> as </b><span style=\"color: maroon\">conjunctivitis</span><span style=\"color: navy\"><b> -&gt; </b></span> <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">, </span> bundle.entry<b> as </b><span style=\"color: maroon\">entry</span><span style=\"color: navy\">, </span> entry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'urn:uuid:'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> section.entry<b> as </b><span style=\"color: maroon\">sectionEntry</span><span style=\"color: navy\">, </span> sectionEntry.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> entry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">observation</span><b> then</b><span style=\"color: navy\"> {\r\n</span>        conjunctivitis<span style=\"color: navy\"><b> -&gt; </b></span>observation.id = <span style=\"color: maroon\">obsid</span> <i>&quot;set obsid&quot;</i><span style=\"color: navy\">;</span>\r\n        conjunctivitis<span style=\"color: navy\"><b> -&gt; </b></span> <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span> coding.code = <span style=\"color: blue\">'DE43'</span><span style=\"color: navy\">, </span> coding.system = <span style=\"color: blue\">'http://worldhealthorganization.github.io/smart-ot/AFROMRCIF'</span><span style=\"color: navy\">, </span> coding.display = <span style=\"color: blue\">'Conjunctivitis'</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          conjunctivitis<span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">conjunctivitis</span><b> then </b>createObservationResource<span style=\"color: navy\">(</span><span style=\"color: maroon\">conjunctivitis</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">observation</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;set obs&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;set obs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;set conjunctivitis&quot;</i><span style=\"color: navy\">;</span>\r\n      clinical.Coryza<b> as </b><span style=\"color: maroon\">coryza</span><span style=\"color: navy\"><b> -&gt; </b></span> <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">, </span> bundle.entry<b> as </b><span style=\"color: maroon\">entry</span><span style=\"color: navy\">, </span> entry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'urn:uuid:'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> section.entry<b> as </b><span style=\"color: maroon\">sectionEntry</span><span style=\"color: navy\">, </span> sectionEntry.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> entry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">observation</span><b> then</b><span style=\"color: navy\"> {\r\n</span>        coryza<span style=\"color: navy\"><b> -&gt; </b></span>observation.id = <span style=\"color: maroon\">obsid</span> <i>&quot;set obsid&quot;</i><span style=\"color: navy\">;</span>\r\n        coryza<span style=\"color: navy\"><b> -&gt; </b></span> <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span> coding.code = <span style=\"color: blue\">'DE47'</span><span style=\"color: navy\">, </span> coding.system = <span style=\"color: blue\">'http://worldhealthorganization.github.io/smart-ot/AFROMRCIF'</span><span style=\"color: navy\">, </span> coding.display = <span style=\"color: blue\">'Coryza'</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          coryza<span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">coryza</span><b> then </b>createObservationResource<span style=\"color: navy\">(</span><span style=\"color: maroon\">coryza</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">observation</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;set obs&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;set obs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;set coryza&quot;</i><span style=\"color: navy\">;</span>\r\n      clinical.Lymphadenopathy<b> as </b><span style=\"color: maroon\">lymphadenopathy</span><span style=\"color: navy\"><b> -&gt; </b></span> <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">, </span> bundle.entry<b> as </b><span style=\"color: maroon\">entry</span><span style=\"color: navy\">, </span> entry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'urn:uuid:'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> section.entry<b> as </b><span style=\"color: maroon\">sectionEntry</span><span style=\"color: navy\">, </span> sectionEntry.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> entry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">observation</span><b> then</b><span style=\"color: navy\"> {\r\n</span>        lymphadenopathy<span style=\"color: navy\"><b> -&gt; </b></span>observation.id = <span style=\"color: maroon\">obsid</span> <i>&quot;set obsid&quot;</i><span style=\"color: navy\">;</span>\r\n        lymphadenopathy<span style=\"color: navy\"><b> -&gt; </b></span> <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span> coding.code = <span style=\"color: blue\">'DE51'</span><span style=\"color: navy\">, </span> coding.system = <span style=\"color: blue\">'http://worldhealthorganization.github.io/smart-ot/AFROMRCIF'</span><span style=\"color: navy\">, </span> coding.display = <span style=\"color: blue\">'Lymphadenopathy'</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          lymphadenopathy<span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">lymphadenopathy</span><b> then </b>createObservationResource<span style=\"color: navy\">(</span><span style=\"color: maroon\">lymphadenopathy</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">observation</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;set obs&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;set obs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;set lymphadenopathy&quot;</i><span style=\"color: navy\">;</span>\r\n      clinical.JointPain<b> as </b><span style=\"color: maroon\">jointPain</span><span style=\"color: navy\"><b> -&gt; </b></span> <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">, </span> bundle.entry<b> as </b><span style=\"color: maroon\">entry</span><span style=\"color: navy\">, </span> entry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'urn:uuid:'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> section.entry<b> as </b><span style=\"color: maroon\">sectionEntry</span><span style=\"color: navy\">, </span> sectionEntry.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> entry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">observation</span><b> then</b><span style=\"color: navy\"> {\r\n</span>        jointPain<span style=\"color: navy\"><b> -&gt; </b></span>observation.id = <span style=\"color: maroon\">obsid</span> <i>&quot;set obsid&quot;</i><span style=\"color: navy\">;</span>\r\n        jointPain<span style=\"color: navy\"><b> -&gt; </b></span> <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span> coding.code = <span style=\"color: blue\">'DE55'</span><span style=\"color: navy\">, </span> coding.system = <span style=\"color: blue\">'http://worldhealthorganization.github.io/smart-ot/AFROMRCIF'</span><span style=\"color: navy\">, </span> coding.display = <span style=\"color: blue\">'Joint Pain'</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          jointPain<span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">jointPain</span><b> then </b>createObservationResource<span style=\"color: navy\">(</span><span style=\"color: maroon\">jointPain</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">observation</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;set obs&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;set obs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;set jointPain&quot;</i><span style=\"color: navy\">;</span>\r\n      clinical.Outcome<b> as </b><span style=\"color: maroon\">outcome</span><span style=\"color: navy\"><b> -&gt; </b></span> <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">, </span> bundle.entry<b> as </b><span style=\"color: maroon\">entry</span><span style=\"color: navy\">, </span> entry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'urn:uuid:'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> section.entry<b> as </b><span style=\"color: maroon\">sectionEntry</span><span style=\"color: navy\">, </span> sectionEntry.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> entry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">observation</span><b> then</b><span style=\"color: navy\"> {\r\n</span>        outcome<span style=\"color: navy\"><b> -&gt; </b></span>observation.id = <span style=\"color: maroon\">obsid</span> <i>&quot;set obsid&quot;</i><span style=\"color: navy\">;</span>\r\n        outcome<span style=\"color: navy\"><b> -&gt; </b></span> <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span> coding.code = <span style=\"color: blue\">'DE63'</span><span style=\"color: navy\">, </span> coding.system = <span style=\"color: blue\">'http://worldhealthorganization.github.io/smart-ot/AFROMRCIF'</span><span style=\"color: navy\">, </span> coding.display = <span style=\"color: blue\">'Outcome'</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          outcome<span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">outcome</span><b> then </b>createObservationResource<span style=\"color: navy\">(</span><span style=\"color: maroon\">outcome</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">observation</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;set obs&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;set obs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;set outcome&quot;</i><span style=\"color: navy\">;</span>\r\n      clinical.travelledOutside<b> as </b><span style=\"color: maroon\">travel</span><span style=\"color: navy\"><b> -&gt; </b></span> <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">, </span> bundle.entry<b> as </b><span style=\"color: maroon\">entry</span><span style=\"color: navy\">, </span> entry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'urn:uuid:'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> section.entry<b> as </b><span style=\"color: maroon\">sectionEntry</span><span style=\"color: navy\">, </span> sectionEntry.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> entry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">observation</span><b> then</b><span style=\"color: navy\"> {\r\n</span>        travel<span style=\"color: navy\"><b> -&gt; </b></span>observation.id = <span style=\"color: maroon\">obsid</span> <i>&quot;set obsid&quot;</i><span style=\"color: navy\">;</span>\r\n        travel<span style=\"color: navy\"><b> -&gt; </b></span> <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span> coding.code = <span style=\"color: blue\">'DE67'</span><span style=\"color: navy\">, </span> coding.system = <span style=\"color: blue\">'http://worldhealthorganization.github.io/smart-ot/AFROMRCIF'</span><span style=\"color: navy\">, </span> coding.display = <span style=\"color: blue\">'Outcome'</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          travel<span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">travel</span><b> then </b>createObservationResource<span style=\"color: navy\">(</span><span style=\"color: maroon\">travel</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">observation</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;set obs&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;set obs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;set travel&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">clinical.specifyInfectionSetting as infection -&gt; uuid() as obsid, bundle.entry as entry, entry.fullUrl = append('urn:uuid:', obsid), section.entry as sectionEntry, sectionEntry.reference = append('Observation/', obsid), entry.resource = create('Observation') as observation then {        infection -&gt; observation.id = obsid &quot;set obsid&quot;;        infection -&gt; create('Coding') as coding, coding.code = &quot;DE71&quot;, coding.system = &quot;http://worldhealthorganization.github.io/smart-ot/AFROMRCIF&quot;, coding.display = &quot;Outcome&quot; then {            infection -&gt; infection then createObservationResource(infection, coding, observation, pid) &quot;set obs&quot;;          } &quot;set obs&quot;;       } &quot;set infection&quot;;</span>\r\n      clinical.HistoryOfHospitalization<b> as </b><span style=\"color: maroon\">admitted</span><span style=\"color: navy\"><b> -&gt; </b></span> <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">, </span> bundle.entry<b> as </b><span style=\"color: maroon\">entry</span><span style=\"color: navy\">, </span> entry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'urn:uuid:'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> section.entry<b> as </b><span style=\"color: maroon\">sectionEntry</span><span style=\"color: navy\">, </span> sectionEntry.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> entry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">observation</span><b> then</b><span style=\"color: navy\"> {\r\n</span>        admitted<span style=\"color: navy\"><b> -&gt; </b></span>observation.id = <span style=\"color: maroon\">obsid</span> <i>&quot;set obsid&quot;</i><span style=\"color: navy\">;</span>\r\n        admitted<span style=\"color: navy\"><b> -&gt; </b></span> <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span> coding.code = <span style=\"color: blue\">'DE59'</span><span style=\"color: navy\">, </span> coding.system = <span style=\"color: blue\">'http://worldhealthorganization.github.io/smart-ot/AFROMRCIF'</span><span style=\"color: navy\">, </span> coding.display = <span style=\"color: blue\">'Outcome'</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          admitted<span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">admitted</span><b> then </b>createObservationResource<span style=\"color: navy\">(</span><span style=\"color: maroon\">admitted</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">observation</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;set obs&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;set obs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;set infection&quot;</i><span style=\"color: navy\">;</span>\r\n    <span style=\"color: navy\">}</span> <i>&quot;set clinical&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span> <i>&quot;set section&quot;</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>createObservationResource<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span>, <b>source</b> <span style=\"color: maroon\">coding</span><span style=\"color: navy\"> : </span>Coding, <b>target</b> <span style=\"color: maroon\">observation</span><span style=\"color: navy\"> : </span>Observation, <b>source</b> <span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span>  src<span style=\"color: navy\"><b> -&gt; </b></span> <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">code</span><span style=\"color: navy\">, </span> code.coding = <span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span> observation.code = <span style=\"color: maroon\">code</span> <i>&quot;set code&quot;</i><span style=\"color: navy\">;</span>\r\n  src<span style=\"color: navy\"><b> -&gt; </b></span> <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">value</span><span style=\"color: navy\">, </span> value.coding = <span style=\"color: maroon\">src</span><span style=\"color: navy\">, </span> observation.value = <span style=\"color: maroon\">value</span> <i>&quot;set value&quot;</i><span style=\"color: navy\">;</span>\r\n  src<span style=\"color: navy\"><b> -&gt; </b></span>observation.status = <span style=\"color: blue\">'registered'</span> <i>&quot;set status&quot;</i><span style=\"color: navy\">;</span>\r\n  src<span style=\"color: navy\"><b> -&gt; </b></span>observation.subject<b> as </b><span style=\"color: maroon\">subject</span><b> then</b><span style=\"color: navy\"> {\r\n</span>    src<span style=\"color: navy\"><b> -&gt; </b></span>subject.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Patient/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;set subject&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span> <i>&quot;set subject&quot;</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>mapLabsToDiagnosticReport<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">lm</span><span style=\"color: navy\"> : </span>MeaslesLogicalModel, <b>target</b> <span style=\"color: maroon\">bundle</span><span style=\"color: navy\"> : </span>Bundle, <b>target</b> <span style=\"color: maroon\">composition</span><span style=\"color: navy\"> : </span>MeaslesCIFComposition, <b>source</b> <span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span>  lm<span style=\"color: navy\"><b> -&gt; </b></span> composition.section<b> as </b><span style=\"color: maroon\">section</span><span style=\"color: navy\">, </span> section.title = <span style=\"color: blue\">'Specimens &amp; Laboratory Testing'</span><b> then</b><span style=\"color: navy\"> {\r\n</span>    lm.LaboratoryResults<b> as </b><span style=\"color: maroon\">labs</span><span style=\"color: navy\"><b> -&gt; </b></span> <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">id</span><span style=\"color: navy\">, </span> bundle.entry<b> as </b><span style=\"color: maroon\">entry</span><span style=\"color: navy\">, </span> entry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'urn:uuid:'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">id</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> section.entry<b> as </b><span style=\"color: maroon\">sectionEntry</span><span style=\"color: navy\">, </span> sectionEntry.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'DiagnosticReport/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">id</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> entry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'DiagnosticReport'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">diagnosticReport</span><b> then</b><span style=\"color: navy\"> {\r\n</span>      labs<span style=\"color: navy\"><b> -&gt; </b></span>diagnosticReport.id = <span style=\"color: maroon\">id</span> <i>&quot;set id&quot;</i><span style=\"color: navy\">;</span>\r\n      labs<span style=\"color: navy\"><b> -&gt; </b></span>diagnosticReport.status = <span style=\"color: blue\">'registered'</span> <i>&quot;set status&quot;</i><span style=\"color: navy\">;</span>\r\n      labs<span style=\"color: navy\"><b> -&gt; </b></span> diagnosticReport.subject<b> as </b><span style=\"color: maroon\">subject</span><span style=\"color: navy\">, </span> subject.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Patient/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;set subject&quot;</i><span style=\"color: navy\">;</span>\r\n      labs.Antigen<b> as </b><span style=\"color: maroon\">antigen</span><span style=\"color: navy\"><b> -&gt; </b></span>diagnosticReport.code<b> as </b><span style=\"color: maroon\">code</span><b> then </b>mapCodingtoCodeableConcept<span style=\"color: navy\">(</span><span style=\"color: maroon\">antigen</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">code</span><span style=\"color: navy\">)</span> <i>&quot;set code&quot;</i><span style=\"color: navy\">;</span>\r\n      labs<span style=\"color: navy\"><b> -&gt; </b></span> <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">id</span><span style=\"color: navy\">, </span> bundle.entry<b> as </b><span style=\"color: maroon\">entry</span><span style=\"color: navy\">, </span> entry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'urn:uuid:'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">id</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> diagnosticReport.specimen<b> as </b><span style=\"color: maroon\">refSpecimen</span><span style=\"color: navy\">, </span> refSpecimen.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Specimen/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">id</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> entry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Specimen'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">specimen</span><b> then</b><span style=\"color: navy\"> {\r\n</span>        labs<span style=\"color: navy\"><b> -&gt; </b></span>specimen.id = <span style=\"color: maroon\">id</span> <i>&quot;Set idn&quot;</i><span style=\"color: navy\">;</span>\r\n        labs.SpecimenCollectionDate<b> as </b><span style=\"color: maroon\">collectDate</span><span style=\"color: navy\"><b> -&gt; </b></span> specimen.collection<b> as </b><span style=\"color: maroon\">collection</span><span style=\"color: navy\">, </span> collection.collected = <span style=\"color: maroon\">collectDate</span> <i>&quot;set date&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">// </span><span style=\"color: green\">labs.SpecimenSentDate as sentDate -&gt;</span>\r\n        labs.SpecimenRecdDate<b> as </b><span style=\"color: maroon\">recdDate</span><span style=\"color: navy\"><b> -&gt; </b></span>specimen.receivedTime = <span style=\"color: maroon\">recdDate</span> <i>&quot;set date&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">// </span><span style=\"color: green\">labs.SampleId as sampleId -&gt; specimen.identifier as identifier, identifier.value = sampleId &quot;set identifier&quot;;</span>\r\n        labs.SampleType<b> as </b><span style=\"color: maroon\">sampleType</span><span style=\"color: navy\"><b> -&gt; </b></span>specimen.type = <span style=\"color: maroon\">sampleType</span> <i>&quot;set type&quot;</i><span style=\"color: navy\">;</span>\r\n        labs.SpecimenNumber<b> as </b><span style=\"color: maroon\">number</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          number.display<b> as </b><span style=\"color: maroon\">text</span><span style=\"color: navy\"><b> -&gt; </b></span> specimen.note<b> as </b><span style=\"color: maroon\">note</span><span style=\"color: navy\">, </span> note.text = <span style=\"color: maroon\">text</span> <i>&quot;set note&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;set note&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;set specimen&quot;</i><span style=\"color: navy\">;</span>\r\n      labs<span style=\"color: navy\"><b> -&gt; </b></span> <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">id</span><span style=\"color: navy\">, </span> bundle.entry<b> as </b><span style=\"color: maroon\">entry</span><span style=\"color: navy\">, </span> entry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'urn:uuid:'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">id</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> diagnosticReport.performer<b> as </b><span style=\"color: maroon\">performer</span><span style=\"color: navy\">, </span> performer.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Organization/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">id</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> entry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Organization'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">perfOrg</span><b> then</b><span style=\"color: navy\"> {\r\n</span>        labs.LabName<b> as </b><span style=\"color: maroon\">labName</span><span style=\"color: navy\"><b> -&gt; </b></span>perfOrg.name = <span style=\"color: maroon\">labName</span> <i>&quot;set name&quot;</i><span style=\"color: navy\">;</span>\r\n        labs<span style=\"color: navy\"><b> -&gt; </b></span>perfOrg.id = <span style=\"color: maroon\">id</span> <i>&quot;set id&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;set performer&quot;</i><span style=\"color: navy\">;</span>\r\n      labs<span style=\"color: navy\"><b> -&gt; </b></span> <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">, </span> bundle.entry<b> as </b><span style=\"color: maroon\">entry</span><span style=\"color: navy\">, </span> entry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'urn:uuid:'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> diagnosticReport.result<b> as </b><span style=\"color: maroon\">result</span><span style=\"color: navy\">, </span> result.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obsid</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> entry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">observation</span><b> then</b><span style=\"color: navy\"> {\r\n</span>        labs<span style=\"color: navy\"><b> -&gt; </b></span>observation.id = <span style=\"color: maroon\">obsid</span> <i>&quot;set obsid&quot;</i><span style=\"color: navy\">;</span>\r\n        labs.TypeOfTest<b> as </b><span style=\"color: maroon\">testType</span><span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">testType</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          labs.Results<b> as </b><span style=\"color: maroon\">result</span><span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">result</span><b> then </b>createObservationResource<span style=\"color: navy\">(</span><span style=\"color: maroon\">result</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">testType</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">observation</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;set obs&quot;</i><span style=\"color: navy\">;</span>\r\n          labs.LabResultsDate<b> as </b><span style=\"color: maroon\">resultDate</span><span style=\"color: navy\"><b> -&gt; </b></span>observation.effective = <span style=\"color: maroon\">resultDate</span> <i>&quot;set start date&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;set testType&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;set results&quot;</i><span style=\"color: navy\">;</span>\r\n      labs.TypeOfTest<b> as </b><span style=\"color: maroon\">testType</span><span style=\"color: navy\"><b> -&gt; </b></span>diagnosticReport.code = <span style=\"color: maroon\">testType</span> <i>&quot;set code&quot;</i><span style=\"color: navy\">;</span>\r\n      labs.LabResultsDate<b> as </b><span style=\"color: maroon\">resultDate</span><span style=\"color: navy\"><b> -&gt; </b></span>diagnosticReport.effective = <span style=\"color: maroon\">resultDate</span> <i>&quot;set date&quot;</i><span style=\"color: navy\">;</span>\r\n    <span style=\"color: navy\">}</span> <i>&quot;set diagnosticReport&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span> <i>&quot;set section&quot;</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>createImmunizationResource<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">vax</span><span style=\"color: navy\"> : </span>AFROMRCIFVaccinationStatus, <b>target</b> <span style=\"color: maroon\">bundle</span><span style=\"color: navy\"> : </span>Bundle, <b>target</b> <span style=\"color: maroon\">section</span><span style=\"color: navy\"> : </span>Element, <b>source</b> <span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span>  vax<span style=\"color: navy\"><b> -&gt; </b></span> <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">id</span><span style=\"color: navy\">, </span> bundle.entry<b> as </b><span style=\"color: maroon\">entry</span><span style=\"color: navy\">, </span> entry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'urn:uuid:'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">id</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> section.entry<b> as </b><span style=\"color: maroon\">sectionEntry</span><span style=\"color: navy\">, </span> sectionEntry.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Immunization/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">id</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> entry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Immunization'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">immunization</span><b> then</b><span style=\"color: navy\"> {\r\n</span>    vax<span style=\"color: navy\"><b> -&gt; </b></span>immunization.id = <span style=\"color: maroon\">id</span> <i>&quot;set id&quot;</i><span style=\"color: navy\">;</span>\r\n    vax<span style=\"color: navy\"><b> -&gt; </b></span>immunization.status = <span style=\"color: blue\">'completed'</span> <i>&quot;set status&quot;</i><span style=\"color: navy\">;</span>\r\n    vax<span style=\"color: navy\"><b> -&gt; </b></span>immunization.vaccineCode<b> as </b><span style=\"color: maroon\">code</span><b> then</b><span style=\"color: navy\"> {\r\n</span>      vax.VaccineType<b> as </b><span style=\"color: maroon\">vaccineType</span><span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">vaccineType</span><b> then </b>mapCodingtoCodeableConcept<span style=\"color: navy\">(</span><span style=\"color: maroon\">vaccineType</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">code</span><span style=\"color: navy\">)</span> <i>&quot;set code&quot;</i><span style=\"color: navy\">;</span>\r\n    <span style=\"color: navy\">}</span> <i>&quot;set&quot;</i><span style=\"color: navy\">;</span>\r\n    vax.Source<b> as </b><span style=\"color: maroon\">source</span><span style=\"color: navy\"><b> -&gt; </b></span>immunization.reportOrigin<b> as </b><span style=\"color: maroon\">origin</span><b> then</b><span style=\"color: navy\"> {\r\n</span>      source<span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">source</span><b> then </b>mapCodingtoCodeableConcept<span style=\"color: navy\">(</span><span style=\"color: maroon\">source</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">origin</span><span style=\"color: navy\">)</span> <i>&quot;set report origin&quot;</i><span style=\"color: navy\">;</span>\r\n    <span style=\"color: navy\">}</span> <i>&quot;set&quot;</i><span style=\"color: navy\">;</span>\r\n    vax.LastDoseDate<b> as </b><span style=\"color: maroon\">date</span><span style=\"color: navy\"><b> -&gt; </b></span>immunization.occurrence = <span style=\"color: maroon\">date</span> <i>&quot;set date&quot;</i><span style=\"color: navy\">;</span>\r\n    vax.NumberOfDoses<b> as </b><span style=\"color: maroon\">doses</span><b> then</b><span style=\"color: navy\"> {\r\n</span>      doses.display<b> as </b><span style=\"color: maroon\">seriesDose</span><span style=\"color: navy\"><b> -&gt; </b></span> immunization.protocolApplied<b> as </b><span style=\"color: maroon\">protocol</span><span style=\"color: navy\">, </span> protocol.series = <span style=\"color: maroon\">seriesDose</span> <i>&quot;set&quot;</i><span style=\"color: navy\">;</span>\r\n    <span style=\"color: navy\">}</span> <i>&quot;set dosenumber&quot;</i><span style=\"color: navy\">;</span>\r\n    vax<span style=\"color: navy\"><b> -&gt; </b></span> immunization.patient<b> as </b><span style=\"color: maroon\">subject</span><span style=\"color: navy\">, </span> subject.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Patient/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;set subject&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span> <i>&quot;ad&quot;</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>mapVaccinationStatusToImmunization<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">lm</span><span style=\"color: navy\"> : </span>MeaslesLogicalModel, <b>target</b> <span style=\"color: maroon\">bundle</span><span style=\"color: navy\"> : </span>Bundle, <b>target</b> <span style=\"color: maroon\">composition</span><span style=\"color: navy\"> : </span>MeaslesCIFComposition, <b>source</b> <span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span>  lm<span style=\"color: navy\"><b> -&gt; </b></span> composition.section<b> as </b><span style=\"color: maroon\">section</span><span style=\"color: navy\">, </span> section.title = <span style=\"color: blue\">'Vaccination History'</span><b> then</b><span style=\"color: navy\"> {\r\n</span>    lm.VaccinationStatus<b> as </b><span style=\"color: maroon\">vax</span><b> then</b><span style=\"color: navy\"> {\r\n</span>      vax.NumberOfDoses<b> as </b><span style=\"color: maroon\">doses</span><b> where </b>code = '99'<span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">doses</span><b> then </b>createImmunizationResource<span style=\"color: navy\">(</span><span style=\"color: maroon\">vax</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">section</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;do&quot;</i><span style=\"color: navy\">;</span>\r\n      vax.NumberOfDoses<b> as </b><span style=\"color: maroon\">doses</span><b> where </b>code = '1'<span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">doses</span><b> then</b><span style=\"color: navy\"> {\r\n</span>        vax.LastDoseDate<b> as </b><span style=\"color: maroon\">date</span><span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">date</span><b> then </b>createImmunizationResource<span style=\"color: navy\">(</span><span style=\"color: maroon\">vax</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">section</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;do1&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;set&quot;</i><span style=\"color: navy\">;</span>\r\n      vax.NumberOfDoses<b> as </b><span style=\"color: maroon\">doses</span><b> where </b>code = '2'<b> then</b><span style=\"color: navy\"> {\r\n</span>        doses<span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">doses</span><b> then </b>createImmunizationResource<span style=\"color: navy\">(</span><span style=\"color: maroon\">vax</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">section</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;do2&quot;</i><span style=\"color: navy\">;</span>\r\n        vax.LastDoseDate<b> as </b><span style=\"color: maroon\">date</span><span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">date</span><b> then </b>createImmunizationResource<span style=\"color: navy\">(</span><span style=\"color: maroon\">vax</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">section</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;do&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;set doses&quot;</i><span style=\"color: navy\">;</span>\r\n      vax.NumberOfDoses<b> as </b><span style=\"color: maroon\">doses</span><b> where </b>code = '3'<b> then</b><span style=\"color: navy\"> {\r\n</span>        vax<span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">doses</span><b> then </b>createImmunizationResource<span style=\"color: navy\">(</span><span style=\"color: maroon\">vax</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">section</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;do&quot;</i><span style=\"color: navy\">;</span>\r\n        vax<span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">doses</span><b> then </b>createImmunizationResource<span style=\"color: navy\">(</span><span style=\"color: maroon\">vax</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">section</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;do&quot;</i><span style=\"color: navy\">;</span>\r\n        vax.LastDoseDate<b> as </b><span style=\"color: maroon\">date</span><span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">date</span><b> then </b>createImmunizationResource<span style=\"color: navy\">(</span><span style=\"color: maroon\">vax</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">section</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;do&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;set doses&quot;</i><span style=\"color: navy\">;</span>\r\n      vax.NumberOfDoses<b> as </b><span style=\"color: maroon\">doses</span><b> where </b>code = '4'<b> then</b><span style=\"color: navy\"> {\r\n</span>        vax<span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">doses</span><b> then </b>createImmunizationResource<span style=\"color: navy\">(</span><span style=\"color: maroon\">vax</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">section</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;do&quot;</i><span style=\"color: navy\">;</span>\r\n        vax<span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">doses</span><b> then </b>createImmunizationResource<span style=\"color: navy\">(</span><span style=\"color: maroon\">vax</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">section</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;do&quot;</i><span style=\"color: navy\">;</span>\r\n        vax<span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">doses</span><b> then </b>createImmunizationResource<span style=\"color: navy\">(</span><span style=\"color: maroon\">vax</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">section</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;do&quot;</i><span style=\"color: navy\">;</span>\r\n        vax.LastDoseDate<b> as </b><span style=\"color: maroon\">date</span><span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">date</span><b> then </b>createImmunizationResource<span style=\"color: navy\">(</span><span style=\"color: maroon\">vax</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">section</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;do&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;set doses&quot;</i><span style=\"color: navy\">;</span>\r\n    <span style=\"color: navy\">}</span> <i>&quot;set status&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span> <i>&quot;set section&quot;</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>LmToComposition<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">lm</span><span style=\"color: navy\"> : </span>AFROMRCIF, <b>target</b> <span style=\"color: maroon\">composition</span><span style=\"color: navy\"> : </span>Composition, <b>source</b> <span style=\"color: maroon\">cid</span>, <b>source</b> <span style=\"color: maroon\">pid</span>, <b>source</b> <span style=\"color: maroon\">prid</span>, <b>source</b> <span style=\"color: maroon\">oid</span>, <b>source</b> <span style=\"color: maroon\">eid</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span>  cid<span style=\"color: navy\"><b> -&gt; </b></span>composition.id = <span style=\"color: maroon\">cid</span> <i>&quot;set id&quot;</i><span style=\"color: navy\">;</span>\r\n  lm<span style=\"color: navy\"><b> -&gt; </b></span>composition.status = <span style=\"color: blue\">'final'</span> <i>&quot;set status&quot;</i><span style=\"color: navy\">;</span>\r\n  lm.ReportingSource<b> as </b><span style=\"color: maroon\">src</span><b> then</b><span style=\"color: navy\"> {\r\n</span>    src.UniqueId<b> as </b><span style=\"color: maroon\">EPIDno</span><span style=\"color: navy\"><b> -&gt; </b></span> composition.identifier<b> as </b><span style=\"color: maroon\">identifier</span><span style=\"color: navy\">, </span> identifier.value = <span style=\"color: maroon\">EPIDno</span> <i>&quot;set identifier&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span> <i>&quot;set&quot;</i><span style=\"color: navy\">;</span>\r\n  lm<span style=\"color: navy\"><b> -&gt; </b></span>composition.title = <span style=\"color: blue\">'PAHO Measles Case Investigation Form'</span> <i>&quot;set title&quot;</i><span style=\"color: navy\">;</span>\r\n  lm<span style=\"color: navy\"><b> -&gt; </b></span> <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span> coding.code = <span style=\"color: blue\">'55751-2'</span><span style=\"color: navy\">, </span> coding.system = <span style=\"color: blue\">'http://loinc.org'</span><span style=\"color: navy\">, </span> coding.display = <span style=\"color: blue\">'Public health Case report'</span><span style=\"color: navy\">, </span> <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">code</span><span style=\"color: navy\">, </span> code.coding = <span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span> composition.type = <span style=\"color: maroon\">code</span> <i>&quot;set type&quot;</i><span style=\"color: navy\">;</span>\r\n  lm.CaseInvestigation<b> as </b><span style=\"color: maroon\">var</span><span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">var</span><b> then</b><span style=\"color: navy\"> {\r\n</span>    var.DateReportedLocal<b> as </b><span style=\"color: maroon\">date</span><span style=\"color: navy\"><b> -&gt; </b></span>composition.date = <span style=\"color: maroon\">date</span> <i>&quot;set date&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span> <i>&quot;set date reported local&quot;</i><span style=\"color: navy\">;</span>\r\n  lm<span style=\"color: navy\"><b> -&gt; </b></span>composition.subject<b> as </b><span style=\"color: maroon\">subject</span><b> then</b><span style=\"color: navy\"> {\r\n</span>    lm<span style=\"color: navy\"><b> -&gt; </b></span>subject.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Patient/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;set subject&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span> <i>&quot;set subject&quot;</i><span style=\"color: navy\">;</span>\r\n  lm<span style=\"color: navy\"><b> -&gt; </b></span>composition.author<b> as </b><span style=\"color: maroon\">practitioner</span><b> then</b><span style=\"color: navy\"> {\r\n</span>    lm<span style=\"color: navy\"><b> -&gt; </b></span>practitioner.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Practitioner/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">prid</span><span style=\"color: navy\">)</span> <i>&quot;set author practitioner&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span> <i>&quot;set author practitioner&quot;</i><span style=\"color: navy\">;</span>\r\n  lm<span style=\"color: navy\"><b> -&gt; </b></span>composition.author<b> as </b><span style=\"color: maroon\">institution</span><b> then</b><span style=\"color: navy\"> {\r\n</span>    lm<span style=\"color: navy\"><b> -&gt; </b></span>institution.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Organization/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">oid</span><span style=\"color: navy\">)</span> <i>&quot;set author institution&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span> <i>&quot;set author org&quot;</i><span style=\"color: navy\">;</span>\r\n  lm<span style=\"color: navy\"><b> -&gt; </b></span>composition.encounter<b> as </b><span style=\"color: maroon\">encounter</span><b> then</b><span style=\"color: navy\"> {\r\n</span>    lm<span style=\"color: navy\"><b> -&gt; </b></span>encounter.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Encounter/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">eid</span><span style=\"color: navy\">)</span> <i>&quot;set encounter&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span> <i>&quot;set encounter&quot;</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>DemographicsToPatient<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">demographics</span><span style=\"color: navy\"> : </span>DemographicsLogicalModel, <b>target</b> <span style=\"color: maroon\">patient</span><span style=\"color: navy\"> : </span>MeaslesPatient, <b>source</b> <span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span>  pid<span style=\"color: navy\"><b> -&gt; </b></span>patient.id = <span style=\"color: maroon\">pid</span> <i>&quot;set patient id&quot;</i><span style=\"color: navy\">;</span>\r\n  demographics.Name<b> as </b><span style=\"color: maroon\">sourceName</span><span style=\"color: navy\"><b> -&gt; </b></span>patient.name<b> as </b><span style=\"color: maroon\">targetName</span><b> then</b><span style=\"color: navy\"> {\r\n</span>    sourceName<span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">sourceName</span><b> then </b>humanNameToHumanName<span style=\"color: navy\">(</span><span style=\"color: maroon\">sourceName</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">targetName</span><span style=\"color: navy\">)</span> <i>&quot;Copy name&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span> <i>&quot;Set name&quot;</i><span style=\"color: navy\">;</span>\r\n  demographics.DateOfBirth<b> as </b><span style=\"color: maroon\">dob</span><span style=\"color: navy\"><b> -&gt; </b></span>patient.birthDate = <span style=\"color: maroon\">dob</span> <i>&quot;set date of birth&quot;</i><span style=\"color: navy\">;</span>\r\n  demographics.Sex<b> as </b><span style=\"color: maroon\">sex</span><span style=\"color: navy\"><b> -&gt; </b></span>patient.gender = <span style=\"color: maroon\">sex</span> <i>&quot;set sex&quot;</i><span style=\"color: navy\">;</span>\r\n  demographics.PlaceOfResidence<b> as </b><span style=\"color: maroon\">sourceAddress</span><span style=\"color: navy\"><b> -&gt; </b></span>patient.address<b> as </b><span style=\"color: maroon\">targetAddress</span><b> then</b><span style=\"color: navy\"> {\r\n</span>    sourceAddress<span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">sourceAddress</span><b> then </b>addressToAddress<span style=\"color: navy\">(</span><span style=\"color: maroon\">sourceAddress</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">targetAddress</span><span style=\"color: navy\">)</span> <i>&quot;Copy Address&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span> <i>&quot;set address&quot;</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>classificationToPractitioner<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">var</span><span style=\"color: navy\"> : </span>AFROMRCIFClassification, <b>target</b> <span style=\"color: maroon\">practitioner</span><span style=\"color: navy\"> : </span>Practitioner, <b>source</b> <span style=\"color: maroon\">prid</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span>  prid<span style=\"color: navy\"><b> -&gt; </b></span>practitioner.id = <span style=\"color: maroon\">prid</span> <i>&quot;set id&quot;</i><span style=\"color: navy\">;</span>\r\n  var.ReportedBy<b> as </b><span style=\"color: maroon\">name</span><span style=\"color: navy\"><b> -&gt; </b></span> practitioner.name<b> as </b><span style=\"color: maroon\">humanName</span><span style=\"color: navy\">, </span> humanName.text = <span style=\"color: maroon\">name</span> <i>&quot;set name&quot;</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>ReportingSourceToOrganization<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">reportingSource</span><span style=\"color: navy\"> : </span>ReportingSourceLogicalModel, <b>target</b> <span style=\"color: maroon\">organization</span><span style=\"color: navy\"> : </span>Organization, <b>source</b> <span style=\"color: maroon\">oid</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span>  oid<span style=\"color: navy\"><b> -&gt; </b></span>organization.id = <span style=\"color: maroon\">oid</span> <i>&quot;set id&quot;</i><span style=\"color: navy\">;</span>\r\n  reportingSource.HealthServiceName<b> as </b><span style=\"color: maroon\">name</span><span style=\"color: navy\"><b> -&gt; </b></span>organization.name = <span style=\"color: maroon\">name</span> <i>&quot;set name&quot;</i><span style=\"color: navy\">;</span>\r\n  reportingSource.HealthServiceTelephone<b> as </b><span style=\"color: maroon\">phoneSource</span><span style=\"color: navy\"><b> -&gt; </b></span> organization.contact<b> as </b><span style=\"color: maroon\">contactDetails</span><span style=\"color: navy\">, </span> contactDetails.telecom<b> as </b><span style=\"color: maroon\">phoneTarget</span><b> then</b><span style=\"color: navy\"> {\r\n</span>    phoneSource<span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">phoneSource</span><b> then </b>contactPointToContactPoint<span style=\"color: navy\">(</span><span style=\"color: maroon\">phoneSource</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">phoneTarget</span><span style=\"color: navy\">)</span> <i>&quot;set org contact&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span> <i>&quot;set phone&quot;</i><span style=\"color: navy\">;</span>\r\n  reportingSource.PlaceOfReporting<b> as </b><span style=\"color: maroon\">locationSource</span><span style=\"color: navy\"><b> -&gt; </b></span> organization.contact<b> as </b><span style=\"color: maroon\">contactDetails</span><span style=\"color: navy\">, </span> contactDetails.address<b> as </b><span style=\"color: maroon\">locationTarget</span><b> then</b><span style=\"color: navy\"> {\r\n</span>    locationSource<span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">locationSource</span><b> then </b>contactPointToContactPoint<span style=\"color: navy\">(</span><span style=\"color: maroon\">locationSource</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">locationTarget</span><span style=\"color: navy\">)</span> <i>&quot;set org address&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span> <i>&quot;set address&quot;</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>createCompositionEncounterResource<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">date</span>, <b>source</b> <span style=\"color: maroon\">pid</span>, <b>source</b> <span style=\"color: maroon\">type</span><span style=\"color: navy\"> : </span>Coding, <b>source</b> <span style=\"color: maroon\">eid</span>, <b>target</b> <span style=\"color: maroon\">encounter</span><span style=\"color: navy\"> : </span>Encounter<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span>  date<span style=\"color: navy\"><b> -&gt; </b></span>encounter.id = <span style=\"color: maroon\">eid</span> <i>&quot;set id&quot;</i><span style=\"color: navy\">;</span>\r\n  date<span style=\"color: navy\"><b> -&gt; </b></span>encounter.status = <span style=\"color: blue\">'finished'</span> <i>&quot;set status&quot;</i><span style=\"color: navy\">;</span>\r\n  pid<span style=\"color: navy\"><b> -&gt; </b></span> encounter.subject<b> as </b><span style=\"color: maroon\">subject</span><span style=\"color: navy\">, </span> subject.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Patient/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pid</span><span style=\"color: navy\">)</span> <i>&quot;set subject&quot;</i><span style=\"color: navy\">;</span>\r\n  date<span style=\"color: navy\"><b> -&gt; </b></span> encounter.period<b> as </b><span style=\"color: maroon\">period</span><span style=\"color: navy\">, </span> period.start = <span style=\"color: maroon\">date</span> <i>&quot;set date&quot;</i><span style=\"color: navy\">;</span>\r\n  type<span style=\"color: navy\"><b> -&gt; </b></span>encounter.class = <span style=\"color: maroon\">type</span> <i>&quot;set type&quot;</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span></pre></div>"
  },
  "url" : "http://worldhealthorganization.github.io/smart-ot/StructureMap/AFROMRCIFLogicalModelToResources",
  "version" : "0.2.1",
  "name" : "AFROMRCIFLogicalModelToResources",
  "status" : "draft",
  "date" : "2023-11-07T05:59:29+00:00",
  "publisher" : "WHO",
  "contact" : [
    {
      "name" : "WHO",
      "telecom" : [
        {
          "system" : "url",
          "value" : "http://who.int"
        }
      ]
    }
  ],
  "jurisdiction" : [
    {
      "coding" : [
        {
          "system" : "http://unstats.un.org/unsd/methods/m49/m49.htm",
          "code" : "001"
        }
      ]
    }
  ],
  "structure" : [
    {
      "url" : "http://worldhealthorganization.github.io/smart-ot/StructureDefinition/AFROMRCIF",
      "mode" : "source",
      "alias" : "MeaslesLogicalModel"
    },
    {
      "url" : "http://hl7.org/fhir/StructureDefinition/Bundle",
      "mode" : "target",
      "alias" : "MeaslesCIFBundle"
    },
    {
      "url" : "http://worldhealthorganization.github.io/smart-ot/StructureDefinition/MeaslesCIFComposition",
      "mode" : "target",
      "alias" : "MeaslesCIFComposition"
    }
  ],
  "import" : [
    "http://worldhealthorganization.github.io/smart-ot/StructureMap/MetaDataTypesHelper"
  ],
  "group" : [
    {
      "name" : "MRCIFLogicalModelToResources",
      "typeMode" : "none",
      "input" : [
        {
          "name" : "lm",
          "type" : "AFROMRCIF",
          "mode" : "source"
        },
        {
          "name" : "bundle",
          "type" : "Bundle",
          "mode" : "target"
        }
      ],
      "rule" : [
        {
          "name" : "set bundle type",
          "source" : [
            {
              "context" : "lm"
            }
          ],
          "target" : [
            {
              "context" : "bundle",
              "contextType" : "variable",
              "element" : "type",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueString" : "document"
                }
              ]
            }
          ]
        },
        {
          "name" : "set id",
          "source" : [
            {
              "context" : "lm"
            }
          ],
          "target" : [
            {
              "contextType" : "variable",
              "variable" : "bid",
              "transform" : "uuid"
            },
            {
              "context" : "bundle",
              "contextType" : "variable",
              "element" : "id",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueId" : "bid"
                }
              ]
            }
          ]
        },
        {
          "name" : "set entries",
          "source" : [
            {
              "context" : "lm"
            }
          ],
          "target" : [
            {
              "contextType" : "variable",
              "variable" : "cid",
              "transform" : "uuid"
            },
            {
              "contextType" : "variable",
              "variable" : "pid",
              "transform" : "uuid"
            },
            {
              "contextType" : "variable",
              "variable" : "prid",
              "transform" : "uuid"
            },
            {
              "contextType" : "variable",
              "variable" : "oid",
              "transform" : "uuid"
            },
            {
              "contextType" : "variable",
              "variable" : "eid",
              "transform" : "uuid"
            }
          ],
          "rule" : [
            {
              "name" : "map composition resource",
              "source" : [
                {
                  "context" : "lm"
                }
              ],
              "target" : [
                {
                  "context" : "bundle",
                  "contextType" : "variable",
                  "element" : "entry",
                  "variable" : "entry"
                },
                {
                  "context" : "entry",
                  "contextType" : "variable",
                  "element" : "resource",
                  "variable" : "composition",
                  "transform" : "create",
                  "parameter" : [
                    {
                      "valueString" : "Composition"
                    }
                  ]
                },
                {
                  "context" : "entry",
                  "contextType" : "variable",
                  "element" : "fullUrl",
                  "transform" : "append",
                  "parameter" : [
                    {
                      "valueString" : "urn:uuid:"
                    },
                    {
                      "valueId" : "cid"
                    }
                  ]
                }
              ],
              "rule" : [
                {
                  "name" : "set",
                  "source" : [
                    {
                      "context" : "lm"
                    }
                  ],
                  "target" : [
                    {
                      "contextType" : "variable",
                      "transform" : "copy",
                      "parameter" : [
                        {
                          "valueId" : "lm"
                        }
                      ]
                    }
                  ],
                  "dependent" : [
                    {
                      "name" : "LmToComposition",
                      "variable" : [
                        "lm",
                        "composition",
                        "cid",
                        "pid",
                        "prid",
                        "oid",
                        "eid"
                      ]
                    }
                  ]
                },
                {
                  "name" : "map patient resource",
                  "source" : [
                    {
                      "context" : "lm"
                    }
                  ],
                  "target" : [
                    {
                      "context" : "bundle",
                      "contextType" : "variable",
                      "element" : "entry",
                      "variable" : "entry"
                    },
                    {
                      "context" : "entry",
                      "contextType" : "variable",
                      "element" : "fullUrl",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "urn:uuid:"
                        },
                        {
                          "valueId" : "pid"
                        }
                      ]
                    },
                    {
                      "contextType" : "variable",
                      "variable" : "patient",
                      "transform" : "create",
                      "parameter" : [
                        {
                          "valueString" : "Patient"
                        }
                      ]
                    }
                  ],
                  "rule" : [
                    {
                      "name" : "create patient",
                      "source" : [
                        {
                          "context" : "lm",
                          "element" : "Demographics",
                          "variable" : "demographics"
                        }
                      ],
                      "target" : [
                        {
                          "contextType" : "variable",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "demographics"
                            }
                          ]
                        }
                      ],
                      "dependent" : [
                        {
                          "name" : "DemographicsToPatient",
                          "variable" : [
                            "demographics",
                            "patient",
                            "pid"
                          ]
                        }
                      ]
                    },
                    {
                      "name" : "set patient as entry",
                      "source" : [
                        {
                          "context" : "lm"
                        }
                      ],
                      "target" : [
                        {
                          "context" : "entry",
                          "contextType" : "variable",
                          "element" : "resource",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "patient"
                            }
                          ]
                        }
                      ]
                    }
                  ]
                },
                {
                  "name" : "map practitioner resource",
                  "source" : [
                    {
                      "context" : "lm"
                    }
                  ],
                  "target" : [
                    {
                      "context" : "bundle",
                      "contextType" : "variable",
                      "element" : "entry",
                      "variable" : "entry"
                    },
                    {
                      "context" : "entry",
                      "contextType" : "variable",
                      "element" : "fullUrl",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "urn:uuid:"
                        },
                        {
                          "valueId" : "prid"
                        }
                      ]
                    },
                    {
                      "contextType" : "variable",
                      "variable" : "practitioner",
                      "transform" : "create",
                      "parameter" : [
                        {
                          "valueString" : "Practitioner"
                        }
                      ]
                    }
                  ],
                  "rule" : [
                    {
                      "name" : "create practitioner",
                      "source" : [
                        {
                          "context" : "lm",
                          "element" : "Classification",
                          "variable" : "classification"
                        }
                      ],
                      "target" : [
                        {
                          "contextType" : "variable",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "classification"
                            }
                          ]
                        }
                      ],
                      "dependent" : [
                        {
                          "name" : "classificationToPractitioner",
                          "variable" : [
                            "classification",
                            "practitioner",
                            "prid"
                          ]
                        }
                      ]
                    },
                    {
                      "name" : "set practitioner as entry",
                      "source" : [
                        {
                          "context" : "lm"
                        }
                      ],
                      "target" : [
                        {
                          "context" : "entry",
                          "contextType" : "variable",
                          "element" : "resource",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "practitioner"
                            }
                          ]
                        }
                      ]
                    }
                  ]
                },
                {
                  "name" : "map organization resource",
                  "source" : [
                    {
                      "context" : "lm"
                    }
                  ],
                  "target" : [
                    {
                      "context" : "bundle",
                      "contextType" : "variable",
                      "element" : "entry",
                      "variable" : "entry"
                    },
                    {
                      "context" : "entry",
                      "contextType" : "variable",
                      "element" : "fullUrl",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "urn:uuid:"
                        },
                        {
                          "valueId" : "oid"
                        }
                      ]
                    },
                    {
                      "contextType" : "variable",
                      "variable" : "organization",
                      "transform" : "create",
                      "parameter" : [
                        {
                          "valueString" : "Organization"
                        }
                      ]
                    }
                  ],
                  "rule" : [
                    {
                      "name" : "create organization",
                      "source" : [
                        {
                          "context" : "lm",
                          "element" : "ReportingSource",
                          "variable" : "reportingSource"
                        }
                      ],
                      "target" : [
                        {
                          "contextType" : "variable",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "reportingSource"
                            }
                          ]
                        }
                      ],
                      "dependent" : [
                        {
                          "name" : "ReportingSourceToOrganization",
                          "variable" : [
                            "reportingSource",
                            "organization",
                            "oid"
                          ]
                        }
                      ]
                    },
                    {
                      "name" : "set organization as entry",
                      "source" : [
                        {
                          "context" : "lm"
                        }
                      ],
                      "target" : [
                        {
                          "context" : "entry",
                          "contextType" : "variable",
                          "element" : "resource",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "organization"
                            }
                          ]
                        }
                      ]
                    }
                  ]
                },
                {
                  "name" : "map encounter resource",
                  "source" : [
                    {
                      "context" : "lm"
                    }
                  ],
                  "target" : [
                    {
                      "context" : "bundle",
                      "contextType" : "variable",
                      "element" : "entry",
                      "variable" : "entry"
                    },
                    {
                      "context" : "entry",
                      "contextType" : "variable",
                      "element" : "fullUrl",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "urn:uuid:"
                        },
                        {
                          "valueId" : "eid"
                        }
                      ]
                    },
                    {
                      "contextType" : "variable",
                      "variable" : "encounter",
                      "transform" : "create",
                      "parameter" : [
                        {
                          "valueString" : "Encounter"
                        }
                      ]
                    }
                  ],
                  "rule" : [
                    {
                      "name" : "set encounter",
                      "source" : [
                        {
                          "context" : "lm",
                          "element" : "lmCaseInvestigation",
                          "variable" : "var"
                        }
                      ],
                      "rule" : [
                        {
                          "name" : "set encounter",
                          "source" : [
                            {
                              "context" : "var",
                              "element" : "DateOfConsultation",
                              "variable" : "date"
                            }
                          ],
                          "rule" : [
                            {
                              "name" : "create encounter",
                              "source" : [
                                {
                                  "context" : "date"
                                }
                              ],
                              "target" : [
                                {
                                  "contextType" : "variable",
                                  "variable" : "type",
                                  "transform" : "create",
                                  "parameter" : [
                                    {
                                      "valueString" : "Coding"
                                    }
                                  ]
                                },
                                {
                                  "context" : "type",
                                  "contextType" : "variable",
                                  "element" : "code",
                                  "transform" : "copy",
                                  "parameter" : [
                                    {
                                      "valueString" : "AMB"
                                    }
                                  ]
                                },
                                {
                                  "context" : "type",
                                  "contextType" : "variable",
                                  "element" : "system",
                                  "transform" : "copy",
                                  "parameter" : [
                                    {
                                      "valueString" : "http://terminology.hl7.org/CodeSystem/v3-ActCode"
                                    }
                                  ]
                                },
                                {
                                  "context" : "type",
                                  "contextType" : "variable",
                                  "element" : "display",
                                  "transform" : "copy",
                                  "parameter" : [
                                    {
                                      "valueString" : "ambulatory"
                                    }
                                  ]
                                }
                              ],
                              "dependent" : [
                                {
                                  "name" : "createCompositionEncounterResource",
                                  "variable" : [
                                    "date",
                                    "pid",
                                    "type",
                                    "eid",
                                    "encounter"
                                  ]
                                }
                              ]
                            }
                          ]
                        }
                      ]
                    },
                    {
                      "name" : "set encounter as entry",
                      "source" : [
                        {
                          "context" : "lm"
                        }
                      ],
                      "target" : [
                        {
                          "context" : "entry",
                          "contextType" : "variable",
                          "element" : "resource",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "encounter"
                            }
                          ]
                        }
                      ]
                    }
                  ]
                },
                {
                  "name" : "set clinical data",
                  "source" : [
                    {
                      "context" : "lm"
                    }
                  ],
                  "target" : [
                    {
                      "contextType" : "variable",
                      "transform" : "copy",
                      "parameter" : [
                        {
                          "valueId" : "lm"
                        }
                      ]
                    }
                  ],
                  "dependent" : [
                    {
                      "name" : "mapClinicalToObservations",
                      "variable" : [
                        "lm",
                        "bundle",
                        "composition",
                        "pid"
                      ]
                    }
                  ]
                },
                {
                  "name" : "set labs data",
                  "source" : [
                    {
                      "context" : "lm"
                    }
                  ],
                  "target" : [
                    {
                      "contextType" : "variable",
                      "transform" : "copy",
                      "parameter" : [
                        {
                          "valueId" : "lm"
                        }
                      ]
                    }
                  ],
                  "dependent" : [
                    {
                      "name" : "mapLabsToDiagnosticReport",
                      "variable" : [
                        "lm",
                        "bundle",
                        "composition",
                        "pid"
                      ]
                    }
                  ]
                },
                {
                  "name" : "set immunization data",
                  "source" : [
                    {
                      "context" : "lm"
                    }
                  ],
                  "target" : [
                    {
                      "contextType" : "variable",
                      "transform" : "copy",
                      "parameter" : [
                        {
                          "valueId" : "lm"
                        }
                      ]
                    }
                  ],
                  "dependent" : [
                    {
                      "name" : "mapVaccinationStatusToImmunization",
                      "variable" : [
                        "lm",
                        "bundle",
                        "composition",
                        "pid"
                      ]
                    }
                  ]
                },
                {
                  "name" : "set classification",
                  "source" : [
                    {
                      "context" : "lm"
                    }
                  ],
                  "target" : [
                    {
                      "contextType" : "variable",
                      "transform" : "copy",
                      "parameter" : [
                        {
                          "valueId" : "lm"
                        }
                      ]
                    }
                  ],
                  "dependent" : [
                    {
                      "name" : "mapClassificationToConditions",
                      "variable" : [
                        "lm",
                        "bundle",
                        "composition",
                        "pid",
                        "eid"
                      ]
                    }
                  ]
                }
              ]
            }
          ]
        }
      ]
    },
    {
      "name" : "mapClassificationToConditions",
      "typeMode" : "none",
      "input" : [
        {
          "name" : "lm",
          "type" : "MeaslesLogicalModel",
          "mode" : "source"
        },
        {
          "name" : "bundle",
          "type" : "Bundle",
          "mode" : "target"
        },
        {
          "name" : "composition",
          "type" : "MeaslesCIFComposition",
          "mode" : "target"
        },
        {
          "name" : "pid",
          "mode" : "source"
        },
        {
          "name" : "eid",
          "mode" : "source"
        }
      ],
      "rule" : [
        {
          "name" : "set section",
          "source" : [
            {
              "context" : "lm"
            }
          ],
          "target" : [
            {
              "context" : "composition",
              "contextType" : "variable",
              "element" : "section",
              "variable" : "section"
            },
            {
              "context" : "section",
              "contextType" : "variable",
              "element" : "title",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueString" : "Classification"
                }
              ]
            }
          ],
          "rule" : [
            {
              "name" : "Set classification",
              "source" : [
                {
                  "context" : "lm",
                  "element" : "Classification",
                  "variable" : "classification"
                }
              ],
              "target" : [
                {
                  "contextType" : "variable",
                  "variable" : "id",
                  "transform" : "uuid"
                },
                {
                  "context" : "bundle",
                  "contextType" : "variable",
                  "element" : "entry",
                  "variable" : "entry"
                },
                {
                  "context" : "entry",
                  "contextType" : "variable",
                  "element" : "fullUrl",
                  "transform" : "append",
                  "parameter" : [
                    {
                      "valueString" : "urn:uuid:"
                    },
                    {
                      "valueId" : "id"
                    }
                  ]
                },
                {
                  "context" : "section",
                  "contextType" : "variable",
                  "element" : "entry",
                  "variable" : "sectionEntry"
                },
                {
                  "context" : "sectionEntry",
                  "contextType" : "variable",
                  "element" : "reference",
                  "transform" : "append",
                  "parameter" : [
                    {
                      "valueString" : "Condition/"
                    },
                    {
                      "valueId" : "id"
                    }
                  ]
                },
                {
                  "context" : "entry",
                  "contextType" : "variable",
                  "element" : "resource",
                  "variable" : "condition",
                  "transform" : "create",
                  "parameter" : [
                    {
                      "valueString" : "Condition"
                    }
                  ]
                }
              ],
              "rule" : [
                {
                  "name" : "set id",
                  "source" : [
                    {
                      "context" : "classification"
                    }
                  ],
                  "target" : [
                    {
                      "context" : "condition",
                      "contextType" : "variable",
                      "element" : "id",
                      "transform" : "copy",
                      "parameter" : [
                        {
                          "valueId" : "id"
                        }
                      ]
                    }
                  ]
                },
                {
                  "name" : "set",
                  "source" : [
                    {
                      "context" : "classification"
                    }
                  ],
                  "target" : [
                    {
                      "context" : "condition",
                      "contextType" : "variable",
                      "element" : "verificationStatus",
                      "variable" : "tgtStatus"
                    },
                    {
                      "contextType" : "variable",
                      "variable" : "status",
                      "transform" : "create",
                      "parameter" : [
                        {
                          "valueString" : "Coding"
                        }
                      ]
                    },
                    {
                      "context" : "status",
                      "contextType" : "variable",
                      "element" : "code",
                      "transform" : "copy",
                      "parameter" : [
                        {
                          "valueString" : "confirmed"
                        }
                      ]
                    },
                    {
                      "context" : "status",
                      "contextType" : "variable",
                      "element" : "system",
                      "transform" : "copy",
                      "parameter" : [
                        {
                          "valueString" : "http://terminology.hl7.org/CodeSystem/condition-ver-status"
                        }
                      ]
                    },
                    {
                      "context" : "status",
                      "contextType" : "variable",
                      "element" : "display",
                      "transform" : "copy",
                      "parameter" : [
                        {
                          "valueString" : "Confirmed"
                        }
                      ]
                    }
                  ],
                  "dependent" : [
                    {
                      "name" : "mapCodingtoCodeableConcept",
                      "variable" : [
                        "status",
                        "tgtStatus"
                      ]
                    }
                  ]
                },
                {
                  "name" : "set subject",
                  "source" : [
                    {
                      "context" : "classification"
                    }
                  ],
                  "target" : [
                    {
                      "context" : "condition",
                      "contextType" : "variable",
                      "element" : "subject",
                      "variable" : "subject"
                    },
                    {
                      "context" : "subject",
                      "contextType" : "variable",
                      "element" : "reference",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "Patient/"
                        },
                        {
                          "valueId" : "pid"
                        }
                      ]
                    }
                  ]
                },
                {
                  "name" : "set code",
                  "source" : [
                    {
                      "context" : "classification",
                      "element" : "FinalClassification",
                      "variable" : "coding"
                    }
                  ],
                  "target" : [
                    {
                      "context" : "condition",
                      "contextType" : "variable",
                      "element" : "code",
                      "variable" : "code"
                    }
                  ],
                  "dependent" : [
                    {
                      "name" : "mapCodingtoCodeableConcept",
                      "variable" : [
                        "coding",
                        "code"
                      ]
                    }
                  ]
                },
                {
                  "name" : "set subject",
                  "source" : [
                    {
                      "context" : "classification"
                    }
                  ],
                  "target" : [
                    {
                      "context" : "condition",
                      "contextType" : "variable",
                      "element" : "encounter",
                      "variable" : "encounter"
                    },
                    {
                      "context" : "encounter",
                      "contextType" : "variable",
                      "element" : "reference",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "Encounter/"
                        },
                        {
                          "valueId" : "eid"
                        }
                      ]
                    }
                  ]
                },
                {
                  "name" : "set",
                  "source" : [
                    {
                      "context" : "classification"
                    }
                  ],
                  "target" : [
                    {
                      "context" : "condition",
                      "contextType" : "variable",
                      "element" : "category",
                      "variable" : "tgt"
                    },
                    {
                      "contextType" : "variable",
                      "variable" : "status",
                      "transform" : "create",
                      "parameter" : [
                        {
                          "valueString" : "Coding"
                        }
                      ]
                    },
                    {
                      "context" : "status",
                      "contextType" : "variable",
                      "element" : "code",
                      "transform" : "copy",
                      "parameter" : [
                        {
                          "valueString" : "encounter-diagnosis"
                        }
                      ]
                    },
                    {
                      "context" : "status",
                      "contextType" : "variable",
                      "element" : "system",
                      "transform" : "copy",
                      "parameter" : [
                        {
                          "valueString" : "http://terminology.hl7.org/CodeSystem/condition-category"
                        }
                      ]
                    },
                    {
                      "context" : "status",
                      "contextType" : "variable",
                      "element" : "display",
                      "transform" : "copy",
                      "parameter" : [
                        {
                          "valueString" : "Encounter Diagnosis"
                        }
                      ]
                    }
                  ],
                  "dependent" : [
                    {
                      "name" : "mapCodingtoCodeableConcept",
                      "variable" : [
                        "status",
                        "tgt"
                      ]
                    }
                  ]
                },
                {
                  "name" : "set",
                  "source" : [
                    {
                      "context" : "classification",
                      "element" : "ClassificationDate",
                      "variable" : "date"
                    }
                  ],
                  "target" : [
                    {
                      "context" : "condition",
                      "contextType" : "variable",
                      "element" : "recordedDate",
                      "transform" : "copy",
                      "parameter" : [
                        {
                          "valueId" : "date"
                        }
                      ]
                    }
                  ]
                },
                {
                  "name" : "set person",
                  "source" : [
                    {
                      "context" : "classification",
                      "element" : "ClassifiedBy",
                      "variable" : "person"
                    }
                  ],
                  "target" : [
                    {
                      "contextType" : "variable",
                      "variable" : "rpid",
                      "transform" : "uuid"
                    },
                    {
                      "context" : "bundle",
                      "contextType" : "variable",
                      "element" : "entry",
                      "variable" : "entry"
                    },
                    {
                      "context" : "entry",
                      "contextType" : "variable",
                      "element" : "fullUrl",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "urn:uuid:"
                        },
                        {
                          "valueId" : "rpid"
                        }
                      ]
                    },
                    {
                      "context" : "section",
                      "contextType" : "variable",
                      "element" : "entry",
                      "variable" : "sectionEntry"
                    },
                    {
                      "context" : "sectionEntry",
                      "contextType" : "variable",
                      "element" : "reference",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "RelatedPerson/"
                        },
                        {
                          "valueId" : "rpid"
                        }
                      ]
                    },
                    {
                      "context" : "entry",
                      "contextType" : "variable",
                      "element" : "resource",
                      "variable" : "recorder",
                      "transform" : "create",
                      "parameter" : [
                        {
                          "valueString" : "RelatedPerson"
                        }
                      ]
                    }
                  ],
                  "rule" : [
                    {
                      "name" : "set id",
                      "source" : [
                        {
                          "context" : "person"
                        }
                      ],
                      "target" : [
                        {
                          "context" : "recorder",
                          "contextType" : "variable",
                          "element" : "id",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "rpid"
                            }
                          ]
                        }
                      ]
                    },
                    {
                      "name" : "set",
                      "source" : [
                        {
                          "context" : "person"
                        }
                      ],
                      "target" : [
                        {
                          "context" : "recorder",
                          "contextType" : "variable",
                          "element" : "name",
                          "variable" : "targetName"
                        },
                        {
                          "contextType" : "variable",
                          "variable" : "name",
                          "transform" : "create",
                          "parameter" : [
                            {
                              "valueString" : "HumanName"
                            }
                          ]
                        },
                        {
                          "context" : "name",
                          "contextType" : "variable",
                          "element" : "text",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "person"
                            }
                          ]
                        }
                      ],
                      "dependent" : [
                        {
                          "name" : "humanNameToHumanName",
                          "variable" : [
                            "name",
                            "targetName"
                          ]
                        }
                      ]
                    },
                    {
                      "name" : "set patient",
                      "source" : [
                        {
                          "context" : "person"
                        }
                      ],
                      "target" : [
                        {
                          "context" : "recorder",
                          "contextType" : "variable",
                          "element" : "patient",
                          "variable" : "patient"
                        },
                        {
                          "context" : "patient",
                          "contextType" : "variable",
                          "element" : "reference",
                          "transform" : "append",
                          "parameter" : [
                            {
                              "valueString" : "Patient/"
                            },
                            {
                              "valueId" : "pid"
                            }
                          ]
                        }
                      ]
                    }
                  ]
                }
              ]
            }
          ]
        }
      ]
    },
    {
      "name" : "mapContactTracing",
      "typeMode" : "none",
      "input" : [
        {
          "name" : "lm",
          "type" : "MeaslesLogicalModel",
          "mode" : "source"
        },
        {
          "name" : "bundle",
          "type" : "Bundle",
          "mode" : "target"
        },
        {
          "name" : "composition",
          "type" : "MeaslesCIFComposition",
          "mode" : "target"
        },
        {
          "name" : "pid",
          "mode" : "source"
        }
      ],
      "rule" : [
        {
          "name" : "set",
          "source" : [
            {
              "context" : "lm"
            }
          ],
          "target" : [
            {
              "context" : "composition",
              "contextType" : "variable",
              "element" : "section",
              "variable" : "section"
            },
            {
              "context" : "section",
              "contextType" : "variable",
              "element" : "title",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueString" : "Contact Tracing"
                }
              ]
            }
          ]
        }
      ]
    },
    {
      "name" : "mapClinicalToObservations",
      "typeMode" : "none",
      "input" : [
        {
          "name" : "lm",
          "type" : "AFROMRCIF",
          "mode" : "source"
        },
        {
          "name" : "bundle",
          "type" : "Bundle",
          "mode" : "target"
        },
        {
          "name" : "composition",
          "type" : "Composition",
          "mode" : "target"
        },
        {
          "name" : "pid",
          "mode" : "source"
        }
      ],
      "rule" : [
        {
          "name" : "set section",
          "source" : [
            {
              "context" : "lm"
            }
          ],
          "target" : [
            {
              "context" : "composition",
              "contextType" : "variable",
              "element" : "section",
              "variable" : "section"
            },
            {
              "context" : "section",
              "contextType" : "variable",
              "element" : "title",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueString" : "Clinical Data, Follow up and Treatment"
                }
              ]
            }
          ],
          "rule" : [
            {
              "name" : "set clinical",
              "source" : [
                {
                  "context" : "lm",
                  "element" : "Clinical",
                  "variable" : "clinical"
                }
              ],
              "target" : [
                {
                  "contextType" : "variable",
                  "transform" : "copy",
                  "parameter" : [
                    {
                      "valueId" : "clinical"
                    }
                  ]
                }
              ],
              "rule" : [
                {
                  "name" : "set fever",
                  "source" : [
                    {
                      "context" : "clinical",
                      "element" : "Fever",
                      "variable" : "fever"
                    }
                  ],
                  "target" : [
                    {
                      "contextType" : "variable",
                      "variable" : "obsid",
                      "transform" : "uuid"
                    },
                    {
                      "context" : "bundle",
                      "contextType" : "variable",
                      "element" : "entry",
                      "variable" : "entry"
                    },
                    {
                      "context" : "entry",
                      "contextType" : "variable",
                      "element" : "fullUrl",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "urn:uuid:"
                        },
                        {
                          "valueId" : "obsid"
                        }
                      ]
                    },
                    {
                      "context" : "section",
                      "contextType" : "variable",
                      "element" : "entry",
                      "variable" : "sectionEntry"
                    },
                    {
                      "context" : "sectionEntry",
                      "contextType" : "variable",
                      "element" : "reference",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "Observation/"
                        },
                        {
                          "valueId" : "obsid"
                        }
                      ]
                    },
                    {
                      "context" : "entry",
                      "contextType" : "variable",
                      "element" : "resource",
                      "variable" : "observation",
                      "transform" : "create",
                      "parameter" : [
                        {
                          "valueString" : "Observation"
                        }
                      ]
                    }
                  ],
                  "rule" : [
                    {
                      "name" : "set obsid",
                      "source" : [
                        {
                          "context" : "fever"
                        }
                      ],
                      "target" : [
                        {
                          "context" : "observation",
                          "contextType" : "variable",
                          "element" : "id",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "obsid"
                            }
                          ]
                        }
                      ]
                    },
                    {
                      "name" : "set obs",
                      "source" : [
                        {
                          "context" : "fever"
                        }
                      ],
                      "target" : [
                        {
                          "contextType" : "variable",
                          "variable" : "coding",
                          "transform" : "create",
                          "parameter" : [
                            {
                              "valueString" : "Coding"
                            }
                          ]
                        },
                        {
                          "context" : "coding",
                          "contextType" : "variable",
                          "element" : "code",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueString" : "DE31"
                            }
                          ]
                        },
                        {
                          "context" : "coding",
                          "contextType" : "variable",
                          "element" : "system",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueString" : "http://worldhealthorganization.github.io/smart-ot/AFROMRCIF"
                            }
                          ]
                        },
                        {
                          "context" : "coding",
                          "contextType" : "variable",
                          "element" : "display",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueString" : "Fever"
                            }
                          ]
                        }
                      ],
                      "rule" : [
                        {
                          "name" : "set obs",
                          "source" : [
                            {
                              "context" : "fever"
                            }
                          ],
                          "target" : [
                            {
                              "contextType" : "variable",
                              "transform" : "copy",
                              "parameter" : [
                                {
                                  "valueId" : "fever"
                                }
                              ]
                            }
                          ],
                          "dependent" : [
                            {
                              "name" : "createObservationResource",
                              "variable" : [
                                "fever",
                                "coding",
                                "observation",
                                "pid"
                              ]
                            }
                          ]
                        }
                      ]
                    }
                  ]
                },
                {
                  "name" : "set Rash",
                  "source" : [
                    {
                      "context" : "clinical",
                      "element" : "Rash",
                      "variable" : "rash"
                    }
                  ],
                  "target" : [
                    {
                      "contextType" : "variable",
                      "variable" : "obsid",
                      "transform" : "uuid"
                    },
                    {
                      "context" : "bundle",
                      "contextType" : "variable",
                      "element" : "entry",
                      "variable" : "entry"
                    },
                    {
                      "context" : "entry",
                      "contextType" : "variable",
                      "element" : "fullUrl",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "urn:uuid:"
                        },
                        {
                          "valueId" : "obsid"
                        }
                      ]
                    },
                    {
                      "context" : "section",
                      "contextType" : "variable",
                      "element" : "entry",
                      "variable" : "sectionEntry"
                    },
                    {
                      "context" : "sectionEntry",
                      "contextType" : "variable",
                      "element" : "reference",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "Observation/"
                        },
                        {
                          "valueId" : "obsid"
                        }
                      ]
                    },
                    {
                      "context" : "entry",
                      "contextType" : "variable",
                      "element" : "resource",
                      "variable" : "observation",
                      "transform" : "create",
                      "parameter" : [
                        {
                          "valueString" : "Observation"
                        }
                      ]
                    }
                  ],
                  "rule" : [
                    {
                      "name" : "set obsid",
                      "source" : [
                        {
                          "context" : "rash"
                        }
                      ],
                      "target" : [
                        {
                          "context" : "observation",
                          "contextType" : "variable",
                          "element" : "id",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "obsid"
                            }
                          ]
                        }
                      ]
                    },
                    {
                      "name" : "set obs",
                      "source" : [
                        {
                          "context" : "rash"
                        }
                      ],
                      "target" : [
                        {
                          "contextType" : "variable",
                          "variable" : "coding",
                          "transform" : "create",
                          "parameter" : [
                            {
                              "valueString" : "Coding"
                            }
                          ]
                        },
                        {
                          "context" : "coding",
                          "contextType" : "variable",
                          "element" : "code",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueString" : "DE35"
                            }
                          ]
                        },
                        {
                          "context" : "coding",
                          "contextType" : "variable",
                          "element" : "system",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueString" : "http://worldhealthorganization.github.io/smart-ot/AFROMRCIF"
                            }
                          ]
                        },
                        {
                          "context" : "coding",
                          "contextType" : "variable",
                          "element" : "display",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueString" : "Rash"
                            }
                          ]
                        }
                      ],
                      "rule" : [
                        {
                          "name" : "set obs",
                          "source" : [
                            {
                              "context" : "rash"
                            }
                          ],
                          "target" : [
                            {
                              "contextType" : "variable",
                              "transform" : "copy",
                              "parameter" : [
                                {
                                  "valueId" : "rash"
                                }
                              ]
                            }
                          ],
                          "dependent" : [
                            {
                              "name" : "createObservationResource",
                              "variable" : [
                                "rash",
                                "coding",
                                "observation",
                                "pid"
                              ]
                            }
                          ]
                        },
                        {
                          "name" : "set",
                          "source" : [
                            {
                              "context" : "lm",
                              "element" : "lmCaseInvestigation",
                              "variable" : "var"
                            }
                          ],
                          "rule" : [
                            {
                              "name" : "set start date",
                              "source" : [
                                {
                                  "context" : "var",
                                  "element" : "RashOnsetDate",
                                  "variable" : "onsetDate"
                                }
                              ],
                              "target" : [
                                {
                                  "contextType" : "variable",
                                  "variable" : "period",
                                  "transform" : "create",
                                  "parameter" : [
                                    {
                                      "valueString" : "Period"
                                    }
                                  ]
                                },
                                {
                                  "context" : "period",
                                  "contextType" : "variable",
                                  "element" : "start",
                                  "transform" : "copy",
                                  "parameter" : [
                                    {
                                      "valueId" : "onsetDate"
                                    }
                                  ]
                                },
                                {
                                  "context" : "observation",
                                  "contextType" : "variable",
                                  "element" : "effective",
                                  "transform" : "copy",
                                  "parameter" : [
                                    {
                                      "valueId" : "period"
                                    }
                                  ]
                                }
                              ]
                            }
                          ]
                        }
                      ]
                    }
                  ]
                },
                {
                  "name" : "set cough",
                  "source" : [
                    {
                      "context" : "clinical",
                      "element" : "Cough",
                      "variable" : "cough"
                    }
                  ],
                  "target" : [
                    {
                      "contextType" : "variable",
                      "variable" : "obsid",
                      "transform" : "uuid"
                    },
                    {
                      "context" : "bundle",
                      "contextType" : "variable",
                      "element" : "entry",
                      "variable" : "entry"
                    },
                    {
                      "context" : "entry",
                      "contextType" : "variable",
                      "element" : "fullUrl",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "urn:uuid:"
                        },
                        {
                          "valueId" : "obsid"
                        }
                      ]
                    },
                    {
                      "context" : "section",
                      "contextType" : "variable",
                      "element" : "entry",
                      "variable" : "sectionEntry"
                    },
                    {
                      "context" : "sectionEntry",
                      "contextType" : "variable",
                      "element" : "reference",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "Observation/"
                        },
                        {
                          "valueId" : "obsid"
                        }
                      ]
                    },
                    {
                      "context" : "entry",
                      "contextType" : "variable",
                      "element" : "resource",
                      "variable" : "observation",
                      "transform" : "create",
                      "parameter" : [
                        {
                          "valueString" : "Observation"
                        }
                      ]
                    }
                  ],
                  "rule" : [
                    {
                      "name" : "set obsid",
                      "source" : [
                        {
                          "context" : "cough"
                        }
                      ],
                      "target" : [
                        {
                          "context" : "observation",
                          "contextType" : "variable",
                          "element" : "id",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "obsid"
                            }
                          ]
                        }
                      ]
                    },
                    {
                      "name" : "set obs",
                      "source" : [
                        {
                          "context" : "cough"
                        }
                      ],
                      "target" : [
                        {
                          "contextType" : "variable",
                          "variable" : "coding",
                          "transform" : "create",
                          "parameter" : [
                            {
                              "valueString" : "Coding"
                            }
                          ]
                        },
                        {
                          "context" : "coding",
                          "contextType" : "variable",
                          "element" : "code",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueString" : "DE39"
                            }
                          ]
                        },
                        {
                          "context" : "coding",
                          "contextType" : "variable",
                          "element" : "system",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueString" : "http://worldhealthorganization.github.io/smart-ot/AFROMRCIF"
                            }
                          ]
                        },
                        {
                          "context" : "coding",
                          "contextType" : "variable",
                          "element" : "display",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueString" : "Cough"
                            }
                          ]
                        }
                      ],
                      "rule" : [
                        {
                          "name" : "set obs",
                          "source" : [
                            {
                              "context" : "cough"
                            }
                          ],
                          "target" : [
                            {
                              "contextType" : "variable",
                              "transform" : "copy",
                              "parameter" : [
                                {
                                  "valueId" : "cough"
                                }
                              ]
                            }
                          ],
                          "dependent" : [
                            {
                              "name" : "createObservationResource",
                              "variable" : [
                                "cough",
                                "coding",
                                "observation",
                                "pid"
                              ]
                            }
                          ]
                        }
                      ]
                    }
                  ]
                },
                {
                  "name" : "set conjunctivitis",
                  "source" : [
                    {
                      "context" : "clinical",
                      "element" : "Conjunctivitis",
                      "variable" : "conjunctivitis"
                    }
                  ],
                  "target" : [
                    {
                      "contextType" : "variable",
                      "variable" : "obsid",
                      "transform" : "uuid"
                    },
                    {
                      "context" : "bundle",
                      "contextType" : "variable",
                      "element" : "entry",
                      "variable" : "entry"
                    },
                    {
                      "context" : "entry",
                      "contextType" : "variable",
                      "element" : "fullUrl",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "urn:uuid:"
                        },
                        {
                          "valueId" : "obsid"
                        }
                      ]
                    },
                    {
                      "context" : "section",
                      "contextType" : "variable",
                      "element" : "entry",
                      "variable" : "sectionEntry"
                    },
                    {
                      "context" : "sectionEntry",
                      "contextType" : "variable",
                      "element" : "reference",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "Observation/"
                        },
                        {
                          "valueId" : "obsid"
                        }
                      ]
                    },
                    {
                      "context" : "entry",
                      "contextType" : "variable",
                      "element" : "resource",
                      "variable" : "observation",
                      "transform" : "create",
                      "parameter" : [
                        {
                          "valueString" : "Observation"
                        }
                      ]
                    }
                  ],
                  "rule" : [
                    {
                      "name" : "set obsid",
                      "source" : [
                        {
                          "context" : "conjunctivitis"
                        }
                      ],
                      "target" : [
                        {
                          "context" : "observation",
                          "contextType" : "variable",
                          "element" : "id",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "obsid"
                            }
                          ]
                        }
                      ]
                    },
                    {
                      "name" : "set obs",
                      "source" : [
                        {
                          "context" : "conjunctivitis"
                        }
                      ],
                      "target" : [
                        {
                          "contextType" : "variable",
                          "variable" : "coding",
                          "transform" : "create",
                          "parameter" : [
                            {
                              "valueString" : "Coding"
                            }
                          ]
                        },
                        {
                          "context" : "coding",
                          "contextType" : "variable",
                          "element" : "code",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueString" : "DE43"
                            }
                          ]
                        },
                        {
                          "context" : "coding",
                          "contextType" : "variable",
                          "element" : "system",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueString" : "http://worldhealthorganization.github.io/smart-ot/AFROMRCIF"
                            }
                          ]
                        },
                        {
                          "context" : "coding",
                          "contextType" : "variable",
                          "element" : "display",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueString" : "Conjunctivitis"
                            }
                          ]
                        }
                      ],
                      "rule" : [
                        {
                          "name" : "set obs",
                          "source" : [
                            {
                              "context" : "conjunctivitis"
                            }
                          ],
                          "target" : [
                            {
                              "contextType" : "variable",
                              "transform" : "copy",
                              "parameter" : [
                                {
                                  "valueId" : "conjunctivitis"
                                }
                              ]
                            }
                          ],
                          "dependent" : [
                            {
                              "name" : "createObservationResource",
                              "variable" : [
                                "conjunctivitis",
                                "coding",
                                "observation",
                                "pid"
                              ]
                            }
                          ]
                        }
                      ]
                    }
                  ]
                },
                {
                  "name" : "set coryza",
                  "source" : [
                    {
                      "context" : "clinical",
                      "element" : "Coryza",
                      "variable" : "coryza"
                    }
                  ],
                  "target" : [
                    {
                      "contextType" : "variable",
                      "variable" : "obsid",
                      "transform" : "uuid"
                    },
                    {
                      "context" : "bundle",
                      "contextType" : "variable",
                      "element" : "entry",
                      "variable" : "entry"
                    },
                    {
                      "context" : "entry",
                      "contextType" : "variable",
                      "element" : "fullUrl",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "urn:uuid:"
                        },
                        {
                          "valueId" : "obsid"
                        }
                      ]
                    },
                    {
                      "context" : "section",
                      "contextType" : "variable",
                      "element" : "entry",
                      "variable" : "sectionEntry"
                    },
                    {
                      "context" : "sectionEntry",
                      "contextType" : "variable",
                      "element" : "reference",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "Observation/"
                        },
                        {
                          "valueId" : "obsid"
                        }
                      ]
                    },
                    {
                      "context" : "entry",
                      "contextType" : "variable",
                      "element" : "resource",
                      "variable" : "observation",
                      "transform" : "create",
                      "parameter" : [
                        {
                          "valueString" : "Observation"
                        }
                      ]
                    }
                  ],
                  "rule" : [
                    {
                      "name" : "set obsid",
                      "source" : [
                        {
                          "context" : "coryza"
                        }
                      ],
                      "target" : [
                        {
                          "context" : "observation",
                          "contextType" : "variable",
                          "element" : "id",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "obsid"
                            }
                          ]
                        }
                      ]
                    },
                    {
                      "name" : "set obs",
                      "source" : [
                        {
                          "context" : "coryza"
                        }
                      ],
                      "target" : [
                        {
                          "contextType" : "variable",
                          "variable" : "coding",
                          "transform" : "create",
                          "parameter" : [
                            {
                              "valueString" : "Coding"
                            }
                          ]
                        },
                        {
                          "context" : "coding",
                          "contextType" : "variable",
                          "element" : "code",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueString" : "DE47"
                            }
                          ]
                        },
                        {
                          "context" : "coding",
                          "contextType" : "variable",
                          "element" : "system",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueString" : "http://worldhealthorganization.github.io/smart-ot/AFROMRCIF"
                            }
                          ]
                        },
                        {
                          "context" : "coding",
                          "contextType" : "variable",
                          "element" : "display",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueString" : "Coryza"
                            }
                          ]
                        }
                      ],
                      "rule" : [
                        {
                          "name" : "set obs",
                          "source" : [
                            {
                              "context" : "coryza"
                            }
                          ],
                          "target" : [
                            {
                              "contextType" : "variable",
                              "transform" : "copy",
                              "parameter" : [
                                {
                                  "valueId" : "coryza"
                                }
                              ]
                            }
                          ],
                          "dependent" : [
                            {
                              "name" : "createObservationResource",
                              "variable" : [
                                "coryza",
                                "coding",
                                "observation",
                                "pid"
                              ]
                            }
                          ]
                        }
                      ]
                    }
                  ]
                },
                {
                  "name" : "set lymphadenopathy",
                  "source" : [
                    {
                      "context" : "clinical",
                      "element" : "Lymphadenopathy",
                      "variable" : "lymphadenopathy"
                    }
                  ],
                  "target" : [
                    {
                      "contextType" : "variable",
                      "variable" : "obsid",
                      "transform" : "uuid"
                    },
                    {
                      "context" : "bundle",
                      "contextType" : "variable",
                      "element" : "entry",
                      "variable" : "entry"
                    },
                    {
                      "context" : "entry",
                      "contextType" : "variable",
                      "element" : "fullUrl",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "urn:uuid:"
                        },
                        {
                          "valueId" : "obsid"
                        }
                      ]
                    },
                    {
                      "context" : "section",
                      "contextType" : "variable",
                      "element" : "entry",
                      "variable" : "sectionEntry"
                    },
                    {
                      "context" : "sectionEntry",
                      "contextType" : "variable",
                      "element" : "reference",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "Observation/"
                        },
                        {
                          "valueId" : "obsid"
                        }
                      ]
                    },
                    {
                      "context" : "entry",
                      "contextType" : "variable",
                      "element" : "resource",
                      "variable" : "observation",
                      "transform" : "create",
                      "parameter" : [
                        {
                          "valueString" : "Observation"
                        }
                      ]
                    }
                  ],
                  "rule" : [
                    {
                      "name" : "set obsid",
                      "source" : [
                        {
                          "context" : "lymphadenopathy"
                        }
                      ],
                      "target" : [
                        {
                          "context" : "observation",
                          "contextType" : "variable",
                          "element" : "id",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "obsid"
                            }
                          ]
                        }
                      ]
                    },
                    {
                      "name" : "set obs",
                      "source" : [
                        {
                          "context" : "lymphadenopathy"
                        }
                      ],
                      "target" : [
                        {
                          "contextType" : "variable",
                          "variable" : "coding",
                          "transform" : "create",
                          "parameter" : [
                            {
                              "valueString" : "Coding"
                            }
                          ]
                        },
                        {
                          "context" : "coding",
                          "contextType" : "variable",
                          "element" : "code",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueString" : "DE51"
                            }
                          ]
                        },
                        {
                          "context" : "coding",
                          "contextType" : "variable",
                          "element" : "system",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueString" : "http://worldhealthorganization.github.io/smart-ot/AFROMRCIF"
                            }
                          ]
                        },
                        {
                          "context" : "coding",
                          "contextType" : "variable",
                          "element" : "display",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueString" : "Lymphadenopathy"
                            }
                          ]
                        }
                      ],
                      "rule" : [
                        {
                          "name" : "set obs",
                          "source" : [
                            {
                              "context" : "lymphadenopathy"
                            }
                          ],
                          "target" : [
                            {
                              "contextType" : "variable",
                              "transform" : "copy",
                              "parameter" : [
                                {
                                  "valueId" : "lymphadenopathy"
                                }
                              ]
                            }
                          ],
                          "dependent" : [
                            {
                              "name" : "createObservationResource",
                              "variable" : [
                                "lymphadenopathy",
                                "coding",
                                "observation",
                                "pid"
                              ]
                            }
                          ]
                        }
                      ]
                    }
                  ]
                },
                {
                  "name" : "set jointPain",
                  "source" : [
                    {
                      "context" : "clinical",
                      "element" : "JointPain",
                      "variable" : "jointPain"
                    }
                  ],
                  "target" : [
                    {
                      "contextType" : "variable",
                      "variable" : "obsid",
                      "transform" : "uuid"
                    },
                    {
                      "context" : "bundle",
                      "contextType" : "variable",
                      "element" : "entry",
                      "variable" : "entry"
                    },
                    {
                      "context" : "entry",
                      "contextType" : "variable",
                      "element" : "fullUrl",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "urn:uuid:"
                        },
                        {
                          "valueId" : "obsid"
                        }
                      ]
                    },
                    {
                      "context" : "section",
                      "contextType" : "variable",
                      "element" : "entry",
                      "variable" : "sectionEntry"
                    },
                    {
                      "context" : "sectionEntry",
                      "contextType" : "variable",
                      "element" : "reference",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "Observation/"
                        },
                        {
                          "valueId" : "obsid"
                        }
                      ]
                    },
                    {
                      "context" : "entry",
                      "contextType" : "variable",
                      "element" : "resource",
                      "variable" : "observation",
                      "transform" : "create",
                      "parameter" : [
                        {
                          "valueString" : "Observation"
                        }
                      ]
                    }
                  ],
                  "rule" : [
                    {
                      "name" : "set obsid",
                      "source" : [
                        {
                          "context" : "jointPain"
                        }
                      ],
                      "target" : [
                        {
                          "context" : "observation",
                          "contextType" : "variable",
                          "element" : "id",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "obsid"
                            }
                          ]
                        }
                      ]
                    },
                    {
                      "name" : "set obs",
                      "source" : [
                        {
                          "context" : "jointPain"
                        }
                      ],
                      "target" : [
                        {
                          "contextType" : "variable",
                          "variable" : "coding",
                          "transform" : "create",
                          "parameter" : [
                            {
                              "valueString" : "Coding"
                            }
                          ]
                        },
                        {
                          "context" : "coding",
                          "contextType" : "variable",
                          "element" : "code",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueString" : "DE55"
                            }
                          ]
                        },
                        {
                          "context" : "coding",
                          "contextType" : "variable",
                          "element" : "system",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueString" : "http://worldhealthorganization.github.io/smart-ot/AFROMRCIF"
                            }
                          ]
                        },
                        {
                          "context" : "coding",
                          "contextType" : "variable",
                          "element" : "display",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueString" : "Joint Pain"
                            }
                          ]
                        }
                      ],
                      "rule" : [
                        {
                          "name" : "set obs",
                          "source" : [
                            {
                              "context" : "jointPain"
                            }
                          ],
                          "target" : [
                            {
                              "contextType" : "variable",
                              "transform" : "copy",
                              "parameter" : [
                                {
                                  "valueId" : "jointPain"
                                }
                              ]
                            }
                          ],
                          "dependent" : [
                            {
                              "name" : "createObservationResource",
                              "variable" : [
                                "jointPain",
                                "coding",
                                "observation",
                                "pid"
                              ]
                            }
                          ]
                        }
                      ]
                    }
                  ]
                },
                {
                  "name" : "set outcome",
                  "source" : [
                    {
                      "context" : "clinical",
                      "element" : "Outcome",
                      "variable" : "outcome"
                    }
                  ],
                  "target" : [
                    {
                      "contextType" : "variable",
                      "variable" : "obsid",
                      "transform" : "uuid"
                    },
                    {
                      "context" : "bundle",
                      "contextType" : "variable",
                      "element" : "entry",
                      "variable" : "entry"
                    },
                    {
                      "context" : "entry",
                      "contextType" : "variable",
                      "element" : "fullUrl",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "urn:uuid:"
                        },
                        {
                          "valueId" : "obsid"
                        }
                      ]
                    },
                    {
                      "context" : "section",
                      "contextType" : "variable",
                      "element" : "entry",
                      "variable" : "sectionEntry"
                    },
                    {
                      "context" : "sectionEntry",
                      "contextType" : "variable",
                      "element" : "reference",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "Observation/"
                        },
                        {
                          "valueId" : "obsid"
                        }
                      ]
                    },
                    {
                      "context" : "entry",
                      "contextType" : "variable",
                      "element" : "resource",
                      "variable" : "observation",
                      "transform" : "create",
                      "parameter" : [
                        {
                          "valueString" : "Observation"
                        }
                      ]
                    }
                  ],
                  "rule" : [
                    {
                      "name" : "set obsid",
                      "source" : [
                        {
                          "context" : "outcome"
                        }
                      ],
                      "target" : [
                        {
                          "context" : "observation",
                          "contextType" : "variable",
                          "element" : "id",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "obsid"
                            }
                          ]
                        }
                      ]
                    },
                    {
                      "name" : "set obs",
                      "source" : [
                        {
                          "context" : "outcome"
                        }
                      ],
                      "target" : [
                        {
                          "contextType" : "variable",
                          "variable" : "coding",
                          "transform" : "create",
                          "parameter" : [
                            {
                              "valueString" : "Coding"
                            }
                          ]
                        },
                        {
                          "context" : "coding",
                          "contextType" : "variable",
                          "element" : "code",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueString" : "DE63"
                            }
                          ]
                        },
                        {
                          "context" : "coding",
                          "contextType" : "variable",
                          "element" : "system",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueString" : "http://worldhealthorganization.github.io/smart-ot/AFROMRCIF"
                            }
                          ]
                        },
                        {
                          "context" : "coding",
                          "contextType" : "variable",
                          "element" : "display",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueString" : "Outcome"
                            }
                          ]
                        }
                      ],
                      "rule" : [
                        {
                          "name" : "set obs",
                          "source" : [
                            {
                              "context" : "outcome"
                            }
                          ],
                          "target" : [
                            {
                              "contextType" : "variable",
                              "transform" : "copy",
                              "parameter" : [
                                {
                                  "valueId" : "outcome"
                                }
                              ]
                            }
                          ],
                          "dependent" : [
                            {
                              "name" : "createObservationResource",
                              "variable" : [
                                "outcome",
                                "coding",
                                "observation",
                                "pid"
                              ]
                            }
                          ]
                        }
                      ]
                    }
                  ]
                },
                {
                  "name" : "set travel",
                  "source" : [
                    {
                      "context" : "clinical",
                      "element" : "travelledOutside",
                      "variable" : "travel"
                    }
                  ],
                  "target" : [
                    {
                      "contextType" : "variable",
                      "variable" : "obsid",
                      "transform" : "uuid"
                    },
                    {
                      "context" : "bundle",
                      "contextType" : "variable",
                      "element" : "entry",
                      "variable" : "entry"
                    },
                    {
                      "context" : "entry",
                      "contextType" : "variable",
                      "element" : "fullUrl",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "urn:uuid:"
                        },
                        {
                          "valueId" : "obsid"
                        }
                      ]
                    },
                    {
                      "context" : "section",
                      "contextType" : "variable",
                      "element" : "entry",
                      "variable" : "sectionEntry"
                    },
                    {
                      "context" : "sectionEntry",
                      "contextType" : "variable",
                      "element" : "reference",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "Observation/"
                        },
                        {
                          "valueId" : "obsid"
                        }
                      ]
                    },
                    {
                      "context" : "entry",
                      "contextType" : "variable",
                      "element" : "resource",
                      "variable" : "observation",
                      "transform" : "create",
                      "parameter" : [
                        {
                          "valueString" : "Observation"
                        }
                      ]
                    }
                  ],
                  "rule" : [
                    {
                      "name" : "set obsid",
                      "source" : [
                        {
                          "context" : "travel"
                        }
                      ],
                      "target" : [
                        {
                          "context" : "observation",
                          "contextType" : "variable",
                          "element" : "id",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "obsid"
                            }
                          ]
                        }
                      ]
                    },
                    {
                      "name" : "set obs",
                      "source" : [
                        {
                          "context" : "travel"
                        }
                      ],
                      "target" : [
                        {
                          "contextType" : "variable",
                          "variable" : "coding",
                          "transform" : "create",
                          "parameter" : [
                            {
                              "valueString" : "Coding"
                            }
                          ]
                        },
                        {
                          "context" : "coding",
                          "contextType" : "variable",
                          "element" : "code",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueString" : "DE67"
                            }
                          ]
                        },
                        {
                          "context" : "coding",
                          "contextType" : "variable",
                          "element" : "system",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueString" : "http://worldhealthorganization.github.io/smart-ot/AFROMRCIF"
                            }
                          ]
                        },
                        {
                          "context" : "coding",
                          "contextType" : "variable",
                          "element" : "display",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueString" : "Outcome"
                            }
                          ]
                        }
                      ],
                      "rule" : [
                        {
                          "name" : "set obs",
                          "source" : [
                            {
                              "context" : "travel"
                            }
                          ],
                          "target" : [
                            {
                              "contextType" : "variable",
                              "transform" : "copy",
                              "parameter" : [
                                {
                                  "valueId" : "travel"
                                }
                              ]
                            }
                          ],
                          "dependent" : [
                            {
                              "name" : "createObservationResource",
                              "variable" : [
                                "travel",
                                "coding",
                                "observation",
                                "pid"
                              ]
                            }
                          ]
                        }
                      ]
                    }
                  ]
                },
                {
                  "name" : "set infection",
                  "source" : [
                    {
                      "context" : "clinical",
                      "element" : "HistoryOfHospitalization",
                      "variable" : "admitted"
                    }
                  ],
                  "target" : [
                    {
                      "contextType" : "variable",
                      "variable" : "obsid",
                      "transform" : "uuid"
                    },
                    {
                      "context" : "bundle",
                      "contextType" : "variable",
                      "element" : "entry",
                      "variable" : "entry"
                    },
                    {
                      "context" : "entry",
                      "contextType" : "variable",
                      "element" : "fullUrl",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "urn:uuid:"
                        },
                        {
                          "valueId" : "obsid"
                        }
                      ]
                    },
                    {
                      "context" : "section",
                      "contextType" : "variable",
                      "element" : "entry",
                      "variable" : "sectionEntry"
                    },
                    {
                      "context" : "sectionEntry",
                      "contextType" : "variable",
                      "element" : "reference",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "Observation/"
                        },
                        {
                          "valueId" : "obsid"
                        }
                      ]
                    },
                    {
                      "context" : "entry",
                      "contextType" : "variable",
                      "element" : "resource",
                      "variable" : "observation",
                      "transform" : "create",
                      "parameter" : [
                        {
                          "valueString" : "Observation"
                        }
                      ]
                    }
                  ],
                  "rule" : [
                    {
                      "name" : "set obsid",
                      "source" : [
                        {
                          "context" : "admitted"
                        }
                      ],
                      "target" : [
                        {
                          "context" : "observation",
                          "contextType" : "variable",
                          "element" : "id",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "obsid"
                            }
                          ]
                        }
                      ]
                    },
                    {
                      "name" : "set obs",
                      "source" : [
                        {
                          "context" : "admitted"
                        }
                      ],
                      "target" : [
                        {
                          "contextType" : "variable",
                          "variable" : "coding",
                          "transform" : "create",
                          "parameter" : [
                            {
                              "valueString" : "Coding"
                            }
                          ]
                        },
                        {
                          "context" : "coding",
                          "contextType" : "variable",
                          "element" : "code",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueString" : "DE59"
                            }
                          ]
                        },
                        {
                          "context" : "coding",
                          "contextType" : "variable",
                          "element" : "system",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueString" : "http://worldhealthorganization.github.io/smart-ot/AFROMRCIF"
                            }
                          ]
                        },
                        {
                          "context" : "coding",
                          "contextType" : "variable",
                          "element" : "display",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueString" : "Outcome"
                            }
                          ]
                        }
                      ],
                      "rule" : [
                        {
                          "name" : "set obs",
                          "source" : [
                            {
                              "context" : "admitted"
                            }
                          ],
                          "target" : [
                            {
                              "contextType" : "variable",
                              "transform" : "copy",
                              "parameter" : [
                                {
                                  "valueId" : "admitted"
                                }
                              ]
                            }
                          ],
                          "dependent" : [
                            {
                              "name" : "createObservationResource",
                              "variable" : [
                                "admitted",
                                "coding",
                                "observation",
                                "pid"
                              ]
                            }
                          ]
                        }
                      ]
                    }
                  ]
                }
              ]
            }
          ]
        }
      ]
    },
    {
      "name" : "createObservationResource",
      "typeMode" : "none",
      "input" : [
        {
          "name" : "src",
          "mode" : "source"
        },
        {
          "name" : "coding",
          "type" : "Coding",
          "mode" : "source"
        },
        {
          "name" : "observation",
          "type" : "Observation",
          "mode" : "target"
        },
        {
          "name" : "pid",
          "mode" : "source"
        }
      ],
      "rule" : [
        {
          "name" : "set code",
          "source" : [
            {
              "context" : "src"
            }
          ],
          "target" : [
            {
              "contextType" : "variable",
              "variable" : "code",
              "transform" : "create",
              "parameter" : [
                {
                  "valueString" : "CodeableConcept"
                }
              ]
            },
            {
              "context" : "code",
              "contextType" : "variable",
              "element" : "coding",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueId" : "coding"
                }
              ]
            },
            {
              "context" : "observation",
              "contextType" : "variable",
              "element" : "code",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueId" : "code"
                }
              ]
            }
          ]
        },
        {
          "name" : "set value",
          "source" : [
            {
              "context" : "src"
            }
          ],
          "target" : [
            {
              "contextType" : "variable",
              "variable" : "value",
              "transform" : "create",
              "parameter" : [
                {
                  "valueString" : "CodeableConcept"
                }
              ]
            },
            {
              "context" : "value",
              "contextType" : "variable",
              "element" : "coding",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueId" : "src"
                }
              ]
            },
            {
              "context" : "observation",
              "contextType" : "variable",
              "element" : "value",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueId" : "value"
                }
              ]
            }
          ]
        },
        {
          "name" : "set status",
          "source" : [
            {
              "context" : "src"
            }
          ],
          "target" : [
            {
              "context" : "observation",
              "contextType" : "variable",
              "element" : "status",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueString" : "registered"
                }
              ]
            }
          ]
        },
        {
          "name" : "set subject",
          "source" : [
            {
              "context" : "src"
            }
          ],
          "target" : [
            {
              "context" : "observation",
              "contextType" : "variable",
              "element" : "subject",
              "variable" : "subject"
            }
          ],
          "rule" : [
            {
              "name" : "set subject",
              "source" : [
                {
                  "context" : "src"
                }
              ],
              "target" : [
                {
                  "context" : "subject",
                  "contextType" : "variable",
                  "element" : "reference",
                  "transform" : "append",
                  "parameter" : [
                    {
                      "valueString" : "Patient/"
                    },
                    {
                      "valueId" : "pid"
                    }
                  ]
                }
              ]
            }
          ]
        }
      ]
    },
    {
      "name" : "mapLabsToDiagnosticReport",
      "typeMode" : "none",
      "input" : [
        {
          "name" : "lm",
          "type" : "MeaslesLogicalModel",
          "mode" : "source"
        },
        {
          "name" : "bundle",
          "type" : "Bundle",
          "mode" : "target"
        },
        {
          "name" : "composition",
          "type" : "MeaslesCIFComposition",
          "mode" : "target"
        },
        {
          "name" : "pid",
          "mode" : "source"
        }
      ],
      "rule" : [
        {
          "name" : "set section",
          "source" : [
            {
              "context" : "lm"
            }
          ],
          "target" : [
            {
              "context" : "composition",
              "contextType" : "variable",
              "element" : "section",
              "variable" : "section"
            },
            {
              "context" : "section",
              "contextType" : "variable",
              "element" : "title",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueString" : "Specimens & Laboratory Testing"
                }
              ]
            }
          ],
          "rule" : [
            {
              "name" : "set diagnosticReport",
              "source" : [
                {
                  "context" : "lm",
                  "element" : "LaboratoryResults",
                  "variable" : "labs"
                }
              ],
              "target" : [
                {
                  "contextType" : "variable",
                  "variable" : "id",
                  "transform" : "uuid"
                },
                {
                  "context" : "bundle",
                  "contextType" : "variable",
                  "element" : "entry",
                  "variable" : "entry"
                },
                {
                  "context" : "entry",
                  "contextType" : "variable",
                  "element" : "fullUrl",
                  "transform" : "append",
                  "parameter" : [
                    {
                      "valueString" : "urn:uuid:"
                    },
                    {
                      "valueId" : "id"
                    }
                  ]
                },
                {
                  "context" : "section",
                  "contextType" : "variable",
                  "element" : "entry",
                  "variable" : "sectionEntry"
                },
                {
                  "context" : "sectionEntry",
                  "contextType" : "variable",
                  "element" : "reference",
                  "transform" : "append",
                  "parameter" : [
                    {
                      "valueString" : "DiagnosticReport/"
                    },
                    {
                      "valueId" : "id"
                    }
                  ]
                },
                {
                  "context" : "entry",
                  "contextType" : "variable",
                  "element" : "resource",
                  "variable" : "diagnosticReport",
                  "transform" : "create",
                  "parameter" : [
                    {
                      "valueString" : "DiagnosticReport"
                    }
                  ]
                }
              ],
              "rule" : [
                {
                  "name" : "set id",
                  "source" : [
                    {
                      "context" : "labs"
                    }
                  ],
                  "target" : [
                    {
                      "context" : "diagnosticReport",
                      "contextType" : "variable",
                      "element" : "id",
                      "transform" : "copy",
                      "parameter" : [
                        {
                          "valueId" : "id"
                        }
                      ]
                    }
                  ]
                },
                {
                  "name" : "set status",
                  "source" : [
                    {
                      "context" : "labs"
                    }
                  ],
                  "target" : [
                    {
                      "context" : "diagnosticReport",
                      "contextType" : "variable",
                      "element" : "status",
                      "transform" : "copy",
                      "parameter" : [
                        {
                          "valueString" : "registered"
                        }
                      ]
                    }
                  ]
                },
                {
                  "name" : "set subject",
                  "source" : [
                    {
                      "context" : "labs"
                    }
                  ],
                  "target" : [
                    {
                      "context" : "diagnosticReport",
                      "contextType" : "variable",
                      "element" : "subject",
                      "variable" : "subject"
                    },
                    {
                      "context" : "subject",
                      "contextType" : "variable",
                      "element" : "reference",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "Patient/"
                        },
                        {
                          "valueId" : "pid"
                        }
                      ]
                    }
                  ]
                },
                {
                  "name" : "set code",
                  "source" : [
                    {
                      "context" : "labs",
                      "element" : "Antigen",
                      "variable" : "antigen"
                    }
                  ],
                  "target" : [
                    {
                      "context" : "diagnosticReport",
                      "contextType" : "variable",
                      "element" : "code",
                      "variable" : "code"
                    }
                  ],
                  "dependent" : [
                    {
                      "name" : "mapCodingtoCodeableConcept",
                      "variable" : [
                        "antigen",
                        "code"
                      ]
                    }
                  ]
                },
                {
                  "name" : "set specimen",
                  "source" : [
                    {
                      "context" : "labs"
                    }
                  ],
                  "target" : [
                    {
                      "contextType" : "variable",
                      "variable" : "id",
                      "transform" : "uuid"
                    },
                    {
                      "context" : "bundle",
                      "contextType" : "variable",
                      "element" : "entry",
                      "variable" : "entry"
                    },
                    {
                      "context" : "entry",
                      "contextType" : "variable",
                      "element" : "fullUrl",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "urn:uuid:"
                        },
                        {
                          "valueId" : "id"
                        }
                      ]
                    },
                    {
                      "context" : "diagnosticReport",
                      "contextType" : "variable",
                      "element" : "specimen",
                      "variable" : "refSpecimen"
                    },
                    {
                      "context" : "refSpecimen",
                      "contextType" : "variable",
                      "element" : "reference",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "Specimen/"
                        },
                        {
                          "valueId" : "id"
                        }
                      ]
                    },
                    {
                      "context" : "entry",
                      "contextType" : "variable",
                      "element" : "resource",
                      "variable" : "specimen",
                      "transform" : "create",
                      "parameter" : [
                        {
                          "valueString" : "Specimen"
                        }
                      ]
                    }
                  ],
                  "rule" : [
                    {
                      "name" : "Set idn",
                      "source" : [
                        {
                          "context" : "labs"
                        }
                      ],
                      "target" : [
                        {
                          "context" : "specimen",
                          "contextType" : "variable",
                          "element" : "id",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "id"
                            }
                          ]
                        }
                      ]
                    },
                    {
                      "name" : "set date",
                      "source" : [
                        {
                          "context" : "labs",
                          "element" : "SpecimenCollectionDate",
                          "variable" : "collectDate"
                        }
                      ],
                      "target" : [
                        {
                          "context" : "specimen",
                          "contextType" : "variable",
                          "element" : "collection",
                          "variable" : "collection"
                        },
                        {
                          "context" : "collection",
                          "contextType" : "variable",
                          "element" : "collected",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "collectDate"
                            }
                          ]
                        }
                      ]
                    },
                    {
                      "name" : "set date",
                      "source" : [
                        {
                          "context" : "labs",
                          "element" : "SpecimenRecdDate",
                          "variable" : "recdDate"
                        }
                      ],
                      "target" : [
                        {
                          "context" : "specimen",
                          "contextType" : "variable",
                          "element" : "receivedTime",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "recdDate"
                            }
                          ]
                        }
                      ]
                    },
                    {
                      "name" : "set type",
                      "source" : [
                        {
                          "context" : "labs",
                          "element" : "SampleType",
                          "variable" : "sampleType"
                        }
                      ],
                      "target" : [
                        {
                          "context" : "specimen",
                          "contextType" : "variable",
                          "element" : "type",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "sampleType"
                            }
                          ]
                        }
                      ]
                    },
                    {
                      "name" : "set note",
                      "source" : [
                        {
                          "context" : "labs",
                          "element" : "SpecimenNumber",
                          "variable" : "number"
                        }
                      ],
                      "rule" : [
                        {
                          "name" : "set note",
                          "source" : [
                            {
                              "context" : "number",
                              "element" : "display",
                              "variable" : "text"
                            }
                          ],
                          "target" : [
                            {
                              "context" : "specimen",
                              "contextType" : "variable",
                              "element" : "note",
                              "variable" : "note"
                            },
                            {
                              "context" : "note",
                              "contextType" : "variable",
                              "element" : "text",
                              "transform" : "copy",
                              "parameter" : [
                                {
                                  "valueId" : "text"
                                }
                              ]
                            }
                          ]
                        }
                      ]
                    }
                  ]
                },
                {
                  "name" : "set performer",
                  "source" : [
                    {
                      "context" : "labs"
                    }
                  ],
                  "target" : [
                    {
                      "contextType" : "variable",
                      "variable" : "id",
                      "transform" : "uuid"
                    },
                    {
                      "context" : "bundle",
                      "contextType" : "variable",
                      "element" : "entry",
                      "variable" : "entry"
                    },
                    {
                      "context" : "entry",
                      "contextType" : "variable",
                      "element" : "fullUrl",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "urn:uuid:"
                        },
                        {
                          "valueId" : "id"
                        }
                      ]
                    },
                    {
                      "context" : "diagnosticReport",
                      "contextType" : "variable",
                      "element" : "performer",
                      "variable" : "performer"
                    },
                    {
                      "context" : "performer",
                      "contextType" : "variable",
                      "element" : "reference",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "Organization/"
                        },
                        {
                          "valueId" : "id"
                        }
                      ]
                    },
                    {
                      "context" : "entry",
                      "contextType" : "variable",
                      "element" : "resource",
                      "variable" : "perfOrg",
                      "transform" : "create",
                      "parameter" : [
                        {
                          "valueString" : "Organization"
                        }
                      ]
                    }
                  ],
                  "rule" : [
                    {
                      "name" : "set name",
                      "source" : [
                        {
                          "context" : "labs",
                          "element" : "LabName",
                          "variable" : "labName"
                        }
                      ],
                      "target" : [
                        {
                          "context" : "perfOrg",
                          "contextType" : "variable",
                          "element" : "name",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "labName"
                            }
                          ]
                        }
                      ]
                    },
                    {
                      "name" : "set id",
                      "source" : [
                        {
                          "context" : "labs"
                        }
                      ],
                      "target" : [
                        {
                          "context" : "perfOrg",
                          "contextType" : "variable",
                          "element" : "id",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "id"
                            }
                          ]
                        }
                      ]
                    }
                  ]
                },
                {
                  "name" : "set results",
                  "source" : [
                    {
                      "context" : "labs"
                    }
                  ],
                  "target" : [
                    {
                      "contextType" : "variable",
                      "variable" : "obsid",
                      "transform" : "uuid"
                    },
                    {
                      "context" : "bundle",
                      "contextType" : "variable",
                      "element" : "entry",
                      "variable" : "entry"
                    },
                    {
                      "context" : "entry",
                      "contextType" : "variable",
                      "element" : "fullUrl",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "urn:uuid:"
                        },
                        {
                          "valueId" : "obsid"
                        }
                      ]
                    },
                    {
                      "context" : "diagnosticReport",
                      "contextType" : "variable",
                      "element" : "result",
                      "variable" : "result"
                    },
                    {
                      "context" : "result",
                      "contextType" : "variable",
                      "element" : "reference",
                      "transform" : "append",
                      "parameter" : [
                        {
                          "valueString" : "Observation/"
                        },
                        {
                          "valueId" : "obsid"
                        }
                      ]
                    },
                    {
                      "context" : "entry",
                      "contextType" : "variable",
                      "element" : "resource",
                      "variable" : "observation",
                      "transform" : "create",
                      "parameter" : [
                        {
                          "valueString" : "Observation"
                        }
                      ]
                    }
                  ],
                  "rule" : [
                    {
                      "name" : "set obsid",
                      "source" : [
                        {
                          "context" : "labs"
                        }
                      ],
                      "target" : [
                        {
                          "context" : "observation",
                          "contextType" : "variable",
                          "element" : "id",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "obsid"
                            }
                          ]
                        }
                      ]
                    },
                    {
                      "name" : "set testType",
                      "source" : [
                        {
                          "context" : "labs",
                          "element" : "TypeOfTest",
                          "variable" : "testType"
                        }
                      ],
                      "target" : [
                        {
                          "contextType" : "variable",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "testType"
                            }
                          ]
                        }
                      ],
                      "rule" : [
                        {
                          "name" : "set obs",
                          "source" : [
                            {
                              "context" : "labs",
                              "element" : "Results",
                              "variable" : "result"
                            }
                          ],
                          "target" : [
                            {
                              "contextType" : "variable",
                              "transform" : "copy",
                              "parameter" : [
                                {
                                  "valueId" : "result"
                                }
                              ]
                            }
                          ],
                          "dependent" : [
                            {
                              "name" : "createObservationResource",
                              "variable" : [
                                "result",
                                "testType",
                                "observation",
                                "pid"
                              ]
                            }
                          ]
                        },
                        {
                          "name" : "set start date",
                          "source" : [
                            {
                              "context" : "labs",
                              "element" : "LabResultsDate",
                              "variable" : "resultDate"
                            }
                          ],
                          "target" : [
                            {
                              "context" : "observation",
                              "contextType" : "variable",
                              "element" : "effective",
                              "transform" : "copy",
                              "parameter" : [
                                {
                                  "valueId" : "resultDate"
                                }
                              ]
                            }
                          ]
                        }
                      ]
                    }
                  ]
                },
                {
                  "name" : "set code",
                  "source" : [
                    {
                      "context" : "labs",
                      "element" : "TypeOfTest",
                      "variable" : "testType"
                    }
                  ],
                  "target" : [
                    {
                      "context" : "diagnosticReport",
                      "contextType" : "variable",
                      "element" : "code",
                      "transform" : "copy",
                      "parameter" : [
                        {
                          "valueId" : "testType"
                        }
                      ]
                    }
                  ]
                },
                {
                  "name" : "set date",
                  "source" : [
                    {
                      "context" : "labs",
                      "element" : "LabResultsDate",
                      "variable" : "resultDate"
                    }
                  ],
                  "target" : [
                    {
                      "context" : "diagnosticReport",
                      "contextType" : "variable",
                      "element" : "effective",
                      "transform" : "copy",
                      "parameter" : [
                        {
                          "valueId" : "resultDate"
                        }
                      ]
                    }
                  ]
                }
              ]
            }
          ]
        }
      ]
    },
    {
      "name" : "createImmunizationResource",
      "typeMode" : "none",
      "input" : [
        {
          "name" : "vax",
          "type" : "AFROMRCIFVaccinationStatus",
          "mode" : "source"
        },
        {
          "name" : "bundle",
          "type" : "Bundle",
          "mode" : "target"
        },
        {
          "name" : "section",
          "type" : "Element",
          "mode" : "target"
        },
        {
          "name" : "pid",
          "mode" : "source"
        }
      ],
      "rule" : [
        {
          "name" : "ad",
          "source" : [
            {
              "context" : "vax"
            }
          ],
          "target" : [
            {
              "contextType" : "variable",
              "variable" : "id",
              "transform" : "uuid"
            },
            {
              "context" : "bundle",
              "contextType" : "variable",
              "element" : "entry",
              "variable" : "entry"
            },
            {
              "context" : "entry",
              "contextType" : "variable",
              "element" : "fullUrl",
              "transform" : "append",
              "parameter" : [
                {
                  "valueString" : "urn:uuid:"
                },
                {
                  "valueId" : "id"
                }
              ]
            },
            {
              "context" : "section",
              "contextType" : "variable",
              "element" : "entry",
              "variable" : "sectionEntry"
            },
            {
              "context" : "sectionEntry",
              "contextType" : "variable",
              "element" : "reference",
              "transform" : "append",
              "parameter" : [
                {
                  "valueString" : "Immunization/"
                },
                {
                  "valueId" : "id"
                }
              ]
            },
            {
              "context" : "entry",
              "contextType" : "variable",
              "element" : "resource",
              "variable" : "immunization",
              "transform" : "create",
              "parameter" : [
                {
                  "valueString" : "Immunization"
                }
              ]
            }
          ],
          "rule" : [
            {
              "name" : "set id",
              "source" : [
                {
                  "context" : "vax"
                }
              ],
              "target" : [
                {
                  "context" : "immunization",
                  "contextType" : "variable",
                  "element" : "id",
                  "transform" : "copy",
                  "parameter" : [
                    {
                      "valueId" : "id"
                    }
                  ]
                }
              ]
            },
            {
              "name" : "set status",
              "source" : [
                {
                  "context" : "vax"
                }
              ],
              "target" : [
                {
                  "context" : "immunization",
                  "contextType" : "variable",
                  "element" : "status",
                  "transform" : "copy",
                  "parameter" : [
                    {
                      "valueString" : "completed"
                    }
                  ]
                }
              ]
            },
            {
              "name" : "set",
              "source" : [
                {
                  "context" : "vax"
                }
              ],
              "target" : [
                {
                  "context" : "immunization",
                  "contextType" : "variable",
                  "element" : "vaccineCode",
                  "variable" : "code"
                }
              ],
              "rule" : [
                {
                  "name" : "set code",
                  "source" : [
                    {
                      "context" : "vax",
                      "element" : "VaccineType",
                      "variable" : "vaccineType"
                    }
                  ],
                  "target" : [
                    {
                      "contextType" : "variable",
                      "transform" : "copy",
                      "parameter" : [
                        {
                          "valueId" : "vaccineType"
                        }
                      ]
                    }
                  ],
                  "dependent" : [
                    {
                      "name" : "mapCodingtoCodeableConcept",
                      "variable" : [
                        "vaccineType",
                        "code"
                      ]
                    }
                  ]
                }
              ]
            },
            {
              "name" : "set",
              "source" : [
                {
                  "context" : "vax",
                  "element" : "Source",
                  "variable" : "source"
                }
              ],
              "target" : [
                {
                  "context" : "immunization",
                  "contextType" : "variable",
                  "element" : "reportOrigin",
                  "variable" : "origin"
                }
              ],
              "rule" : [
                {
                  "name" : "set report origin",
                  "source" : [
                    {
                      "context" : "source"
                    }
                  ],
                  "target" : [
                    {
                      "contextType" : "variable",
                      "transform" : "copy",
                      "parameter" : [
                        {
                          "valueId" : "source"
                        }
                      ]
                    }
                  ],
                  "dependent" : [
                    {
                      "name" : "mapCodingtoCodeableConcept",
                      "variable" : [
                        "source",
                        "origin"
                      ]
                    }
                  ]
                }
              ]
            },
            {
              "name" : "set date",
              "source" : [
                {
                  "context" : "vax",
                  "element" : "LastDoseDate",
                  "variable" : "date"
                }
              ],
              "target" : [
                {
                  "context" : "immunization",
                  "contextType" : "variable",
                  "element" : "occurrence",
                  "transform" : "copy",
                  "parameter" : [
                    {
                      "valueId" : "date"
                    }
                  ]
                }
              ]
            },
            {
              "name" : "set dosenumber",
              "source" : [
                {
                  "context" : "vax",
                  "element" : "NumberOfDoses",
                  "variable" : "doses"
                }
              ],
              "rule" : [
                {
                  "name" : "set",
                  "source" : [
                    {
                      "context" : "doses",
                      "element" : "display",
                      "variable" : "seriesDose"
                    }
                  ],
                  "target" : [
                    {
                      "context" : "immunization",
                      "contextType" : "variable",
                      "element" : "protocolApplied",
                      "variable" : "protocol"
                    },
                    {
                      "context" : "protocol",
                      "contextType" : "variable",
                      "element" : "series",
                      "transform" : "copy",
                      "parameter" : [
                        {
                          "valueId" : "seriesDose"
                        }
                      ]
                    }
                  ]
                }
              ]
            },
            {
              "name" : "set subject",
              "source" : [
                {
                  "context" : "vax"
                }
              ],
              "target" : [
                {
                  "context" : "immunization",
                  "contextType" : "variable",
                  "element" : "patient",
                  "variable" : "subject"
                },
                {
                  "context" : "subject",
                  "contextType" : "variable",
                  "element" : "reference",
                  "transform" : "append",
                  "parameter" : [
                    {
                      "valueString" : "Patient/"
                    },
                    {
                      "valueId" : "pid"
                    }
                  ]
                }
              ]
            }
          ]
        }
      ]
    },
    {
      "name" : "mapVaccinationStatusToImmunization",
      "typeMode" : "none",
      "input" : [
        {
          "name" : "lm",
          "type" : "MeaslesLogicalModel",
          "mode" : "source"
        },
        {
          "name" : "bundle",
          "type" : "Bundle",
          "mode" : "target"
        },
        {
          "name" : "composition",
          "type" : "MeaslesCIFComposition",
          "mode" : "target"
        },
        {
          "name" : "pid",
          "mode" : "source"
        }
      ],
      "rule" : [
        {
          "name" : "set section",
          "source" : [
            {
              "context" : "lm"
            }
          ],
          "target" : [
            {
              "context" : "composition",
              "contextType" : "variable",
              "element" : "section",
              "variable" : "section"
            },
            {
              "context" : "section",
              "contextType" : "variable",
              "element" : "title",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueString" : "Vaccination History"
                }
              ]
            }
          ],
          "rule" : [
            {
              "name" : "set status",
              "source" : [
                {
                  "context" : "lm",
                  "element" : "VaccinationStatus",
                  "variable" : "vax"
                }
              ],
              "rule" : [
                {
                  "name" : "do",
                  "source" : [
                    {
                      "context" : "vax",
                      "element" : "NumberOfDoses",
                      "variable" : "doses",
                      "condition" : "code = '99'"
                    }
                  ],
                  "target" : [
                    {
                      "contextType" : "variable",
                      "transform" : "copy",
                      "parameter" : [
                        {
                          "valueId" : "doses"
                        }
                      ]
                    }
                  ],
                  "dependent" : [
                    {
                      "name" : "createImmunizationResource",
                      "variable" : [
                        "vax",
                        "bundle",
                        "section",
                        "pid"
                      ]
                    }
                  ]
                },
                {
                  "name" : "set",
                  "source" : [
                    {
                      "context" : "vax",
                      "element" : "NumberOfDoses",
                      "variable" : "doses",
                      "condition" : "code = '1'"
                    }
                  ],
                  "target" : [
                    {
                      "contextType" : "variable",
                      "transform" : "copy",
                      "parameter" : [
                        {
                          "valueId" : "doses"
                        }
                      ]
                    }
                  ],
                  "rule" : [
                    {
                      "name" : "do1",
                      "source" : [
                        {
                          "context" : "vax",
                          "element" : "LastDoseDate",
                          "variable" : "date"
                        }
                      ],
                      "target" : [
                        {
                          "contextType" : "variable",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "date"
                            }
                          ]
                        }
                      ],
                      "dependent" : [
                        {
                          "name" : "createImmunizationResource",
                          "variable" : [
                            "vax",
                            "bundle",
                            "section",
                            "pid"
                          ]
                        }
                      ]
                    }
                  ]
                },
                {
                  "name" : "set doses",
                  "source" : [
                    {
                      "context" : "vax",
                      "element" : "NumberOfDoses",
                      "variable" : "doses",
                      "condition" : "code = '2'"
                    }
                  ],
                  "rule" : [
                    {
                      "name" : "do2",
                      "source" : [
                        {
                          "context" : "doses"
                        }
                      ],
                      "target" : [
                        {
                          "contextType" : "variable",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "doses"
                            }
                          ]
                        }
                      ],
                      "dependent" : [
                        {
                          "name" : "createImmunizationResource",
                          "variable" : [
                            "vax",
                            "bundle",
                            "section",
                            "pid"
                          ]
                        }
                      ]
                    },
                    {
                      "name" : "do",
                      "source" : [
                        {
                          "context" : "vax",
                          "element" : "LastDoseDate",
                          "variable" : "date"
                        }
                      ],
                      "target" : [
                        {
                          "contextType" : "variable",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "date"
                            }
                          ]
                        }
                      ],
                      "dependent" : [
                        {
                          "name" : "createImmunizationResource",
                          "variable" : [
                            "vax",
                            "bundle",
                            "section",
                            "pid"
                          ]
                        }
                      ]
                    }
                  ]
                },
                {
                  "name" : "set doses",
                  "source" : [
                    {
                      "context" : "vax",
                      "element" : "NumberOfDoses",
                      "variable" : "doses",
                      "condition" : "code = '3'"
                    }
                  ],
                  "rule" : [
                    {
                      "name" : "do",
                      "source" : [
                        {
                          "context" : "vax"
                        }
                      ],
                      "target" : [
                        {
                          "contextType" : "variable",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "doses"
                            }
                          ]
                        }
                      ],
                      "dependent" : [
                        {
                          "name" : "createImmunizationResource",
                          "variable" : [
                            "vax",
                            "bundle",
                            "section",
                            "pid"
                          ]
                        }
                      ]
                    },
                    {
                      "name" : "do",
                      "source" : [
                        {
                          "context" : "vax"
                        }
                      ],
                      "target" : [
                        {
                          "contextType" : "variable",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "doses"
                            }
                          ]
                        }
                      ],
                      "dependent" : [
                        {
                          "name" : "createImmunizationResource",
                          "variable" : [
                            "vax",
                            "bundle",
                            "section",
                            "pid"
                          ]
                        }
                      ]
                    },
                    {
                      "name" : "do",
                      "source" : [
                        {
                          "context" : "vax",
                          "element" : "LastDoseDate",
                          "variable" : "date"
                        }
                      ],
                      "target" : [
                        {
                          "contextType" : "variable",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "date"
                            }
                          ]
                        }
                      ],
                      "dependent" : [
                        {
                          "name" : "createImmunizationResource",
                          "variable" : [
                            "vax",
                            "bundle",
                            "section",
                            "pid"
                          ]
                        }
                      ]
                    }
                  ]
                },
                {
                  "name" : "set doses",
                  "source" : [
                    {
                      "context" : "vax",
                      "element" : "NumberOfDoses",
                      "variable" : "doses",
                      "condition" : "code = '4'"
                    }
                  ],
                  "rule" : [
                    {
                      "name" : "do",
                      "source" : [
                        {
                          "context" : "vax"
                        }
                      ],
                      "target" : [
                        {
                          "contextType" : "variable",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "doses"
                            }
                          ]
                        }
                      ],
                      "dependent" : [
                        {
                          "name" : "createImmunizationResource",
                          "variable" : [
                            "vax",
                            "bundle",
                            "section",
                            "pid"
                          ]
                        }
                      ]
                    },
                    {
                      "name" : "do",
                      "source" : [
                        {
                          "context" : "vax"
                        }
                      ],
                      "target" : [
                        {
                          "contextType" : "variable",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "doses"
                            }
                          ]
                        }
                      ],
                      "dependent" : [
                        {
                          "name" : "createImmunizationResource",
                          "variable" : [
                            "vax",
                            "bundle",
                            "section",
                            "pid"
                          ]
                        }
                      ]
                    },
                    {
                      "name" : "do",
                      "source" : [
                        {
                          "context" : "vax"
                        }
                      ],
                      "target" : [
                        {
                          "contextType" : "variable",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "doses"
                            }
                          ]
                        }
                      ],
                      "dependent" : [
                        {
                          "name" : "createImmunizationResource",
                          "variable" : [
                            "vax",
                            "bundle",
                            "section",
                            "pid"
                          ]
                        }
                      ]
                    },
                    {
                      "name" : "do",
                      "source" : [
                        {
                          "context" : "vax",
                          "element" : "LastDoseDate",
                          "variable" : "date"
                        }
                      ],
                      "target" : [
                        {
                          "contextType" : "variable",
                          "transform" : "copy",
                          "parameter" : [
                            {
                              "valueId" : "date"
                            }
                          ]
                        }
                      ],
                      "dependent" : [
                        {
                          "name" : "createImmunizationResource",
                          "variable" : [
                            "vax",
                            "bundle",
                            "section",
                            "pid"
                          ]
                        }
                      ]
                    }
                  ]
                }
              ]
            }
          ]
        }
      ]
    },
    {
      "name" : "LmToComposition",
      "typeMode" : "none",
      "input" : [
        {
          "name" : "lm",
          "type" : "AFROMRCIF",
          "mode" : "source"
        },
        {
          "name" : "composition",
          "type" : "Composition",
          "mode" : "target"
        },
        {
          "name" : "cid",
          "mode" : "source"
        },
        {
          "name" : "pid",
          "mode" : "source"
        },
        {
          "name" : "prid",
          "mode" : "source"
        },
        {
          "name" : "oid",
          "mode" : "source"
        },
        {
          "name" : "eid",
          "mode" : "source"
        }
      ],
      "rule" : [
        {
          "name" : "set id",
          "source" : [
            {
              "context" : "cid"
            }
          ],
          "target" : [
            {
              "context" : "composition",
              "contextType" : "variable",
              "element" : "id",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueId" : "cid"
                }
              ]
            }
          ]
        },
        {
          "name" : "set status",
          "source" : [
            {
              "context" : "lm"
            }
          ],
          "target" : [
            {
              "context" : "composition",
              "contextType" : "variable",
              "element" : "status",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueString" : "final"
                }
              ]
            }
          ]
        },
        {
          "name" : "set",
          "source" : [
            {
              "context" : "lm",
              "element" : "ReportingSource",
              "variable" : "src"
            }
          ],
          "rule" : [
            {
              "name" : "set identifier",
              "source" : [
                {
                  "context" : "src",
                  "element" : "UniqueId",
                  "variable" : "EPIDno"
                }
              ],
              "target" : [
                {
                  "context" : "composition",
                  "contextType" : "variable",
                  "element" : "identifier",
                  "variable" : "identifier"
                },
                {
                  "context" : "identifier",
                  "contextType" : "variable",
                  "element" : "value",
                  "transform" : "copy",
                  "parameter" : [
                    {
                      "valueId" : "EPIDno"
                    }
                  ]
                }
              ]
            }
          ]
        },
        {
          "name" : "set title",
          "source" : [
            {
              "context" : "lm"
            }
          ],
          "target" : [
            {
              "context" : "composition",
              "contextType" : "variable",
              "element" : "title",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueString" : "PAHO Measles Case Investigation Form"
                }
              ]
            }
          ]
        },
        {
          "name" : "set type",
          "source" : [
            {
              "context" : "lm"
            }
          ],
          "target" : [
            {
              "contextType" : "variable",
              "variable" : "coding",
              "transform" : "create",
              "parameter" : [
                {
                  "valueString" : "Coding"
                }
              ]
            },
            {
              "context" : "coding",
              "contextType" : "variable",
              "element" : "code",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueString" : "55751-2"
                }
              ]
            },
            {
              "context" : "coding",
              "contextType" : "variable",
              "element" : "system",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueString" : "http://loinc.org"
                }
              ]
            },
            {
              "context" : "coding",
              "contextType" : "variable",
              "element" : "display",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueString" : "Public health Case report"
                }
              ]
            },
            {
              "contextType" : "variable",
              "variable" : "code",
              "transform" : "create",
              "parameter" : [
                {
                  "valueString" : "CodeableConcept"
                }
              ]
            },
            {
              "context" : "code",
              "contextType" : "variable",
              "element" : "coding",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueId" : "coding"
                }
              ]
            },
            {
              "context" : "composition",
              "contextType" : "variable",
              "element" : "type",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueId" : "code"
                }
              ]
            }
          ]
        },
        {
          "name" : "set date reported local",
          "source" : [
            {
              "context" : "lm",
              "element" : "CaseInvestigation",
              "variable" : "var"
            }
          ],
          "target" : [
            {
              "contextType" : "variable",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueId" : "var"
                }
              ]
            }
          ],
          "rule" : [
            {
              "name" : "set date",
              "source" : [
                {
                  "context" : "var",
                  "element" : "DateReportedLocal",
                  "variable" : "date"
                }
              ],
              "target" : [
                {
                  "context" : "composition",
                  "contextType" : "variable",
                  "element" : "date",
                  "transform" : "copy",
                  "parameter" : [
                    {
                      "valueId" : "date"
                    }
                  ]
                }
              ]
            }
          ]
        },
        {
          "name" : "set subject",
          "source" : [
            {
              "context" : "lm"
            }
          ],
          "target" : [
            {
              "context" : "composition",
              "contextType" : "variable",
              "element" : "subject",
              "variable" : "subject"
            }
          ],
          "rule" : [
            {
              "name" : "set subject",
              "source" : [
                {
                  "context" : "lm"
                }
              ],
              "target" : [
                {
                  "context" : "subject",
                  "contextType" : "variable",
                  "element" : "reference",
                  "transform" : "append",
                  "parameter" : [
                    {
                      "valueString" : "Patient/"
                    },
                    {
                      "valueId" : "pid"
                    }
                  ]
                }
              ]
            }
          ]
        },
        {
          "name" : "set author practitioner",
          "source" : [
            {
              "context" : "lm"
            }
          ],
          "target" : [
            {
              "context" : "composition",
              "contextType" : "variable",
              "element" : "author",
              "variable" : "practitioner"
            }
          ],
          "rule" : [
            {
              "name" : "set author practitioner",
              "source" : [
                {
                  "context" : "lm"
                }
              ],
              "target" : [
                {
                  "context" : "practitioner",
                  "contextType" : "variable",
                  "element" : "reference",
                  "transform" : "append",
                  "parameter" : [
                    {
                      "valueString" : "Practitioner/"
                    },
                    {
                      "valueId" : "prid"
                    }
                  ]
                }
              ]
            }
          ]
        },
        {
          "name" : "set author org",
          "source" : [
            {
              "context" : "lm"
            }
          ],
          "target" : [
            {
              "context" : "composition",
              "contextType" : "variable",
              "element" : "author",
              "variable" : "institution"
            }
          ],
          "rule" : [
            {
              "name" : "set author institution",
              "source" : [
                {
                  "context" : "lm"
                }
              ],
              "target" : [
                {
                  "context" : "institution",
                  "contextType" : "variable",
                  "element" : "reference",
                  "transform" : "append",
                  "parameter" : [
                    {
                      "valueString" : "Organization/"
                    },
                    {
                      "valueId" : "oid"
                    }
                  ]
                }
              ]
            }
          ]
        },
        {
          "name" : "set encounter",
          "source" : [
            {
              "context" : "lm"
            }
          ],
          "target" : [
            {
              "context" : "composition",
              "contextType" : "variable",
              "element" : "encounter",
              "variable" : "encounter"
            }
          ],
          "rule" : [
            {
              "name" : "set encounter",
              "source" : [
                {
                  "context" : "lm"
                }
              ],
              "target" : [
                {
                  "context" : "encounter",
                  "contextType" : "variable",
                  "element" : "reference",
                  "transform" : "append",
                  "parameter" : [
                    {
                      "valueString" : "Encounter/"
                    },
                    {
                      "valueId" : "eid"
                    }
                  ]
                }
              ]
            }
          ]
        }
      ]
    },
    {
      "name" : "DemographicsToPatient",
      "typeMode" : "none",
      "input" : [
        {
          "name" : "demographics",
          "type" : "DemographicsLogicalModel",
          "mode" : "source"
        },
        {
          "name" : "patient",
          "type" : "MeaslesPatient",
          "mode" : "target"
        },
        {
          "name" : "pid",
          "mode" : "source"
        }
      ],
      "rule" : [
        {
          "name" : "set patient id",
          "source" : [
            {
              "context" : "pid"
            }
          ],
          "target" : [
            {
              "context" : "patient",
              "contextType" : "variable",
              "element" : "id",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueId" : "pid"
                }
              ]
            }
          ]
        },
        {
          "name" : "Set name",
          "source" : [
            {
              "context" : "demographics",
              "element" : "Name",
              "variable" : "sourceName"
            }
          ],
          "target" : [
            {
              "context" : "patient",
              "contextType" : "variable",
              "element" : "name",
              "variable" : "targetName"
            }
          ],
          "rule" : [
            {
              "name" : "Copy name",
              "source" : [
                {
                  "context" : "sourceName"
                }
              ],
              "target" : [
                {
                  "contextType" : "variable",
                  "transform" : "copy",
                  "parameter" : [
                    {
                      "valueId" : "sourceName"
                    }
                  ]
                }
              ],
              "dependent" : [
                {
                  "name" : "humanNameToHumanName",
                  "variable" : [
                    "sourceName",
                    "targetName"
                  ]
                }
              ]
            }
          ]
        },
        {
          "name" : "set date of birth",
          "source" : [
            {
              "context" : "demographics",
              "element" : "DateOfBirth",
              "variable" : "dob"
            }
          ],
          "target" : [
            {
              "context" : "patient",
              "contextType" : "variable",
              "element" : "birthDate",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueId" : "dob"
                }
              ]
            }
          ]
        },
        {
          "name" : "set sex",
          "source" : [
            {
              "context" : "demographics",
              "element" : "Sex",
              "variable" : "sex"
            }
          ],
          "target" : [
            {
              "context" : "patient",
              "contextType" : "variable",
              "element" : "gender",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueId" : "sex"
                }
              ]
            }
          ]
        },
        {
          "name" : "set address",
          "source" : [
            {
              "context" : "demographics",
              "element" : "PlaceOfResidence",
              "variable" : "sourceAddress"
            }
          ],
          "target" : [
            {
              "context" : "patient",
              "contextType" : "variable",
              "element" : "address",
              "variable" : "targetAddress"
            }
          ],
          "rule" : [
            {
              "name" : "Copy Address",
              "source" : [
                {
                  "context" : "sourceAddress"
                }
              ],
              "target" : [
                {
                  "contextType" : "variable",
                  "transform" : "copy",
                  "parameter" : [
                    {
                      "valueId" : "sourceAddress"
                    }
                  ]
                }
              ],
              "dependent" : [
                {
                  "name" : "addressToAddress",
                  "variable" : [
                    "sourceAddress",
                    "targetAddress"
                  ]
                }
              ]
            }
          ]
        }
      ]
    },
    {
      "name" : "classificationToPractitioner",
      "typeMode" : "none",
      "input" : [
        {
          "name" : "var",
          "type" : "AFROMRCIFClassification",
          "mode" : "source"
        },
        {
          "name" : "practitioner",
          "type" : "Practitioner",
          "mode" : "target"
        },
        {
          "name" : "prid",
          "mode" : "source"
        }
      ],
      "rule" : [
        {
          "name" : "set id",
          "source" : [
            {
              "context" : "prid"
            }
          ],
          "target" : [
            {
              "context" : "practitioner",
              "contextType" : "variable",
              "element" : "id",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueId" : "prid"
                }
              ]
            }
          ]
        },
        {
          "name" : "set name",
          "source" : [
            {
              "context" : "var",
              "element" : "ReportedBy",
              "variable" : "name"
            }
          ],
          "target" : [
            {
              "context" : "practitioner",
              "contextType" : "variable",
              "element" : "name",
              "variable" : "humanName"
            },
            {
              "context" : "humanName",
              "contextType" : "variable",
              "element" : "text",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueId" : "name"
                }
              ]
            }
          ]
        }
      ]
    },
    {
      "name" : "ReportingSourceToOrganization",
      "typeMode" : "none",
      "input" : [
        {
          "name" : "reportingSource",
          "type" : "ReportingSourceLogicalModel",
          "mode" : "source"
        },
        {
          "name" : "organization",
          "type" : "Organization",
          "mode" : "target"
        },
        {
          "name" : "oid",
          "mode" : "source"
        }
      ],
      "rule" : [
        {
          "name" : "set id",
          "source" : [
            {
              "context" : "oid"
            }
          ],
          "target" : [
            {
              "context" : "organization",
              "contextType" : "variable",
              "element" : "id",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueId" : "oid"
                }
              ]
            }
          ]
        },
        {
          "name" : "set name",
          "source" : [
            {
              "context" : "reportingSource",
              "element" : "HealthServiceName",
              "variable" : "name"
            }
          ],
          "target" : [
            {
              "context" : "organization",
              "contextType" : "variable",
              "element" : "name",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueId" : "name"
                }
              ]
            }
          ]
        },
        {
          "name" : "set phone",
          "source" : [
            {
              "context" : "reportingSource",
              "element" : "HealthServiceTelephone",
              "variable" : "phoneSource"
            }
          ],
          "target" : [
            {
              "context" : "organization",
              "contextType" : "variable",
              "element" : "contact",
              "variable" : "contactDetails"
            },
            {
              "context" : "contactDetails",
              "contextType" : "variable",
              "element" : "telecom",
              "variable" : "phoneTarget"
            }
          ],
          "rule" : [
            {
              "name" : "set org contact",
              "source" : [
                {
                  "context" : "phoneSource"
                }
              ],
              "target" : [
                {
                  "contextType" : "variable",
                  "transform" : "copy",
                  "parameter" : [
                    {
                      "valueId" : "phoneSource"
                    }
                  ]
                }
              ],
              "dependent" : [
                {
                  "name" : "contactPointToContactPoint",
                  "variable" : [
                    "phoneSource",
                    "phoneTarget"
                  ]
                }
              ]
            }
          ]
        },
        {
          "name" : "set address",
          "source" : [
            {
              "context" : "reportingSource",
              "element" : "PlaceOfReporting",
              "variable" : "locationSource"
            }
          ],
          "target" : [
            {
              "context" : "organization",
              "contextType" : "variable",
              "element" : "contact",
              "variable" : "contactDetails"
            },
            {
              "context" : "contactDetails",
              "contextType" : "variable",
              "element" : "address",
              "variable" : "locationTarget"
            }
          ],
          "rule" : [
            {
              "name" : "set org address",
              "source" : [
                {
                  "context" : "locationSource"
                }
              ],
              "target" : [
                {
                  "contextType" : "variable",
                  "transform" : "copy",
                  "parameter" : [
                    {
                      "valueId" : "locationSource"
                    }
                  ]
                }
              ],
              "dependent" : [
                {
                  "name" : "contactPointToContactPoint",
                  "variable" : [
                    "locationSource",
                    "locationTarget"
                  ]
                }
              ]
            }
          ]
        }
      ]
    },
    {
      "name" : "createCompositionEncounterResource",
      "typeMode" : "none",
      "input" : [
        {
          "name" : "date",
          "mode" : "source"
        },
        {
          "name" : "pid",
          "mode" : "source"
        },
        {
          "name" : "type",
          "type" : "Coding",
          "mode" : "source"
        },
        {
          "name" : "eid",
          "mode" : "source"
        },
        {
          "name" : "encounter",
          "type" : "Encounter",
          "mode" : "target"
        }
      ],
      "rule" : [
        {
          "name" : "set id",
          "source" : [
            {
              "context" : "date"
            }
          ],
          "target" : [
            {
              "context" : "encounter",
              "contextType" : "variable",
              "element" : "id",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueId" : "eid"
                }
              ]
            }
          ]
        },
        {
          "name" : "set status",
          "source" : [
            {
              "context" : "date"
            }
          ],
          "target" : [
            {
              "context" : "encounter",
              "contextType" : "variable",
              "element" : "status",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueString" : "finished"
                }
              ]
            }
          ]
        },
        {
          "name" : "set subject",
          "source" : [
            {
              "context" : "pid"
            }
          ],
          "target" : [
            {
              "context" : "encounter",
              "contextType" : "variable",
              "element" : "subject",
              "variable" : "subject"
            },
            {
              "context" : "subject",
              "contextType" : "variable",
              "element" : "reference",
              "transform" : "append",
              "parameter" : [
                {
                  "valueString" : "Patient/"
                },
                {
                  "valueId" : "pid"
                }
              ]
            }
          ]
        },
        {
          "name" : "set date",
          "source" : [
            {
              "context" : "date"
            }
          ],
          "target" : [
            {
              "context" : "encounter",
              "contextType" : "variable",
              "element" : "period",
              "variable" : "period"
            },
            {
              "context" : "period",
              "contextType" : "variable",
              "element" : "start",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueId" : "date"
                }
              ]
            }
          ]
        },
        {
          "name" : "set type",
          "source" : [
            {
              "context" : "type"
            }
          ],
          "target" : [
            {
              "context" : "encounter",
              "contextType" : "variable",
              "element" : "class",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueId" : "type"
                }
              ]
            }
          ]
        }
      ]
    }
  ]
}