map "http://worldhealthorganization.github.io/smart-ot/StructureMap/MeaslesQuestionnaireToLogicalModel" = "MeaslesQuestionnaireToLogicalModel"

uses "http://hl7.org/fhir/StructureDefinition/QuestionnaireResponse" alias QuestionnaireResponse as source
uses "http://worldhealthorganization.github.io/smart-ot/StructureDefinition/SOTMeasles" alias MeaslesLogicalModel as target

group MeaslesQuestionnaireToLogicalModel(source qr : QuestionnaireResponse, target measlesLm : SOTMeasles) {
  qr.item as item where linkId.value in ('investigationForm') -> measlesLm as measlesLm then mapInvestigationForm(item, measlesLm) "set Investigation form";
}

group mapInvestigationForm(source investigationForm, target measlesLm : SOTMeasles) {
  investigationForm.item as qrReportingSource where linkId.value in ('reportingSource') -> measlesLm.ReportingSource as lmReportingSource then mapReportingSource(qrReportingSource, lmReportingSource) "set Reporting Source";
  investigationForm.item as qrDemographics where linkId.value in ('demographics') -> measlesLm.Demographics as lmDemographics then mapDemographics(qrDemographics, lmDemographics) "set Demographics";
  investigationForm.item as qrVaccinationStatus where linkId.value in ('vaccinationStatus') -> measlesLm.VaccinationStatus as lmVaccinationStatus then mapVaccinationStatus(qrVaccinationStatus, lmVaccinationStatus) "set Vaccination Status";
  investigationForm.item as qrClinical where linkId.value in ('clinical') -> measlesLm.Clinical as lmClinical then mapClinical(qrClinical, lmClinical) "set Clinical";
  investigationForm.item as qrLaboratoryResults where linkId.value in ('laboratoryResults') -> measlesLm.LaboratoryResults as lmLaboratoryResults then mapLaboratoryResults(qrLaboratoryResults, lmLaboratoryResults) "set Laboratory Results";
  investigationForm.item as qrContactTracing where linkId.value in ('contactTracing') -> measlesLm.ContactTracing as lmContactTracing then mapContactTracing(qrContactTracing, lmContactTracing) "set Contact Tracing";
  investigationForm.item as qrEpiData where linkId.value in ('epiData') -> measlesLm.EpiData as lmEpiData then mapEpiData(qrEpiData, lmEpiData) "set Epi Data";
  investigationForm.item as qrClassification where linkId.value in ('classification') -> measlesLm.Classification as lmClassification then mapClassification(qrClassification, lmClassification) "set Classification";
}

group mapReportingSource(source qrReportingSource, target lmReportingSource : SOTMeaslesReportingSource) {
  qrReportingSource.item as item then {
    item.answer first as initialDiagnosis where item.linkId = 'initialDiagnosis' then {
      initialDiagnosis.value as coding -> lmReportingSource.InitialDiagnosis = coding "set Initial Diagnosis";
    } "set initial diag";
    item.answer first as reportedBy where item.linkId = 'reportedBy' then {
      reportedBy.value as value -> lmReportingSource.ReportedBy = value "set case ID";
    } "set case ID";
    qrReportingSource.item as qrReportingInstitution where linkId.value in ('reportingInstitution') -> lmReportingSource as lmReportingSource then mapReportingInstitution(qrReportingInstitution, lmReportingSource) "set reporting institution";
    item.answer first as dateOfConsultation where item.linkId = 'DateOfConsultation' then {
      dateOfConsultation.value as value -> lmReportingSource.DateOfConsultation = value "set date of consultation";
    } "set date of consultation";
    item.answer first as dateOfHomeVisit where item.linkId = 'DateOfHomeVisit' then {
      dateOfHomeVisit.value as value -> lmReportingSource.DateOfHomeVisit = value "set date of home visit";
    } "set date of home visit";
    item.answer first as dateReportedLocal where item.linkId = 'dateReported' then {
      dateReportedLocal.value as value -> lmReportingSource.DateReportedLocal = value "set date reported local";
    } "set date reported local";
    item.answer first as dateReportedNational where item.linkId = 'DateReportedNational' then {
      dateReportedNational.value as value -> lmReportingSource.DateReportedNational = value "set date reported national";
    } "set date reported national";
    item.answer first as providerType where item.linkId = 'TypeOfProviderReporting' then {
      providerType.value as value -> lmReportingSource.TypeOfProviderReporting = value "set provider type";
    } "set provider type";
    item.answer first as detectedBy where item.linkId = 'DetectedBy' then {
      detectedBy.value as value -> lmReportingSource.DetectedBy = value "set detected by";
    } "set detected by";
  } "set reporting source";
}

group mapReportingInstitution(source qrReportingInstitution, target lmReportingSource : SOTMeaslesReportingSource) {
  qrReportingInstitution.item as item then {
    item.answer first as reportingFacility where item.linkId = 'reportingFacility' then {
      reportingFacility.value as healthFacilityName -> lmReportingSource.HealthServiceName = healthFacilityName "set health facility name";
    } "set health facility name";
    item.answer first as telephone where item.linkId = 'telephone' then {
      telephone.value as value ->  create('ContactPoint') as lmTelephone,  lmTelephone.value = value,  lmReportingSource.HealthServiceTelephone = lmTelephone "set telephone";
    } "set telephone";
    qrReportingInstitution -> create('Address') as lmAddress then {
      item.answer first as country where item.linkId = 'country' then {
        country.value as countryValue -> lmAddress.country = countryValue "set country";
      } "set country";
      item.answer first as municipality where item.linkId = 'municipality' then {
        municipality.value as cityValue -> lmAddress.city = cityValue "set city";
      } "set city  ";
      item.answer first as state where item.linkId = 'state' then {
        state.value as stateValue -> lmAddress.state = stateValue "set state";
      } "set state";
      item.answer first as locality where item.linkId = 'locality' then {
        locality.value as localityValue -> lmAddress.line = localityValue "set locality";
      } "set locality";
      qrReportingInstitution -> lmReportingSource.PlaceOfReporting = lmAddress "assign address";
    } "set address";
  } "set reporting institution";
}

group mapDemographics(source qrDemographics, target lmDemographics : SOTMeaslesDemographic) {
  qrDemographics.item as item then {
    item.answer first as name where item.linkId = 'name' then {
      name.value as nameValue ->  create('HumanName') as lmName,  lmName.family = nameValue,  lmDemographics.Name = lmName "set name";
    } "set name";
    item.answer first as guardian where item.linkId = 'guardian' then {
      guardian.value as value ->  create('HumanName') as lmGuardian,  lmGuardian.family = value,  lmDemographics.Guardian = lmGuardian "set guardian";
    } "set guardian";
    item.answer first as address where item.linkId = 'address' then {
      address.value as value ->  create('Address') as lmAddress,  lmAddress.text = value,  lmDemographics.PlaceOfResidence = lmAddress "set address";
    } "set address";
    item.answer first as telephone where item.linkId = 'telephone' then {
      telephone.value as value ->  create('ContactPoint') as lmTelephone,  lmTelephone.value = value,  lmDemographics.Telephone = lmTelephone "set telephone";
    } "set telephone";
    item.answer first as landmark where item.linkId = 'landmark' then {
      landmark.value as value -> lmDemographics.Landmark = value "set landmark";
    } "set landmark";
    item.answer first as occupation where item.linkId = 'occupation' then {
      occupation.value as value -> lmDemographics.Occupation = value "set occupation";
    } "set occupation";
    item.answer first as location where item.linkId = 'location living in' then {
      location.value as value -> locationlmDemographics.LocalityType = value "set Locality Type";
    } "set Locality Type";
    item.answer first as workAddress where item.linkId = 'workAddress' then {
      workAddress.value as value ->  create('Address') as lmAddress,  lmAddress.text = value,  lmDemographics.WorkAddress = lmAddress "set workAddress";
    } "set workAddress";
    item.answer first as sex where item.linkId = 'sex' then {
      sex.value as value -> lmDemographics.Sex = value "set sex";
    } "set sex";
    item.answer first as DoB where item.linkId = 'DoB' then {
      DoB.value as value -> lmDemographics.DateOfBirth = value "set DoB";
    } "set DoB";
    item.answer first as ageOnset where item.linkId = 'ageOnset' then {
      ageOnset.value as value ->  create('Quantity') as lmAgeOnset,  lmAgeOnset.value = value,  lmDemographics.Age = lmAgeOnset "set ageOnset";
    } "set ageOnset";
  } "set demographics";
}

group mapVaccinationStatus(source qrVaccinationStatus, target lmVaccinationStatus : SOTMeaslesVaccinationStatus) {
  qrVaccinationStatus.item as item then {
    item.answer first as lastDoseDate where item.linkId = 'lastDoseDate' then {
      lastDoseDate.value as value -> lmVaccinationStatus.LastDoseDate = value "set Last Dose Date";
    } "set last dose date";
    item.answer first as sourceOfInformation where item.linkId = 'sourceOfInformation' then {
      sourceOfInformation.value as value -> lmVaccinationStatus.Source = value "set Source of Vaccination Information";
    } "set";
    item.answer first as noOfDoses where item.linkId = 'noOfDoses' then {
      noOfDoses.value as value -> lmVaccinationStatus.NumberOfDoses = value "set number of doses";
    } "set";
    item.answer first as vaccineType where item.linkId = 'vaccineType' then {
      vaccineType.value as value -> lmVaccinationStatus.VaccineType = value "set vaccine type";
    } "set";
  } "set";
}

group mapClinical(source qrClinical, target lmClinical : SOTMeaslesClinical) {
  qrClinical.item as item then {
    item.answer first as fever where item.linkId = 'fever' then {
      fever.value as value -> lmClinical.Fever = value "set Fever";
    } "set";
    item.answer first as temperature where item.linkId = 'temperature' then {
      temperature.value as value ->  lmClinical.Temperature as temp,  temp.value = value "set Temperature";
    } "set";
    item.answer first as dateOfFeverOnset where item.linkId = 'dateOfFeverOnset' then {
      dateOfFeverOnset.value as value -> lmClinical.FeverOnsetDate = value "set Date of Fever Onset";
    } "set";
    item.answer first as rash where item.linkId = 'rash' then {
      rash.value as value -> lmClinical.Rash = value "set Rash";
    } "set";
    item.answer first as rashType where item.linkId = 'rashType' then {
      rashType.value as value -> lmClinical.TypeOfRash = value "set Rash Type";
    } "set";
    item.answer first as rashDuration where item.linkId = 'rashDuration' then {
      rashDuration.value as value -> lmClinical.DurationOfRash = value "set Rash Duration";
    } "set";
    item.answer first as rashOnsetDate where item.linkId = 'rashOnsetDate' then {
      rashOnsetDate.value as value -> lmClinical.RashOnsetDate = value "set Rash Onset Date";
    } "set";
    item.answer first as cough where item.linkId = 'cough' then {
      cough.value as value -> lmClinical.Cough = value "set Cough";
    } "set";
    item.answer first as conjunctivitis where item.linkId = 'conjunctivitis' then {
      conjunctivitis.value as value -> lmClinical.Conjunctivitis = value "set Conjunctivitis";
    } "set";
    item.answer first as coryza where item.linkId = 'coryza' then {
      coryza.value as value -> lmClinical.Coryza = value "set Coryza";
    } "set";
    item.answer first as koplikSpots where item.linkId = 'koplikSpots' then {
      koplikSpots.value as value -> lmClinical.KoplikSpots = value "set Koplik Spots";
    } "set";
    item.answer first as lymphadenopathy where item.linkId = 'lymphadenopathy' then {
      lymphadenopathy.value as value -> lmClinical.Lymphadenopathy = value "set Lymphadenopathy";
    } "set";
    item.answer first as jointPain where item.linkId = 'jointPain' then {
      jointPain.value as value -> lmClinical.JointPain = value "set Arthralgia";
    } "set";
    item.answer first as pregnancy where item.linkId = 'pregnancy' then {
      pregnancy.value as value -> lmClinical.PregnancyStatus = value "set Pregnant";
    } "set";
    item.answer first as monthsPregnant where item.linkId = 'monthsPregnant' then {
      monthsPregnant.value as value ->  lmClinical.GestationWeeks as weeks,  weeks.value = value "set Pregnancy Weeks";
    } "set";
    item.answer first as placeOfBirth where item.linkId = 'placeOfBirth' then {
      placeOfBirth.value as value -> lmClinical.IntentedBirthPlacce = value "set Place of Birth";
    } "set";
    item.answer first as admitted where item.linkId = 'admitted' then {
      admitted.value as value -> lmClinical.HistoryOfHospitalization = value "set Hospitalized";
    } "set";
    item.answer first as admittedHCFName where item.linkId = 'admittedHCFName' then {
      admittedHCFName.value as value -> lmClinical.HospitalName = value "set Hospital Name";
    } "set";
    item.answer first as admissionDate where item.linkId = 'admissionDate' then {
      admissionDate.value as value -> lmClinical.DateOfAdmission = value "set Admission Date";
    } "set";
    item.answer first as hospitalRecordNumber where item.linkId = 'hospitalRecordNumber' then {
      hospitalRecordNumber.value as value -> lmClinical.HospitalRecordNumber = value "set Hospital Record Number";
    } "set";
    item.answer first as outcome where item.linkId = 'outcome' then {
      outcome.value as value -> lmClinical.Outcome = value "set Outcome";
    } "set";
    item.answer first as deathCause where item.linkId = 'primaryCauseOfDeath' then {
      deathCause.value as value -> lmClinical.primaryCauseOfDeath = value "set cause";
    } "set";
    item.answer first as outcomeDate where item.linkId = 'outcomeDate' then {
      outcomeDate.value as value -> lmClinical.DateOfDeath = value "set death date";
    } "set";
    item.answer first as diseaseAdditionalInfo where item.linkId = 'diseaseAdditionalInfo' then {
      diseaseAdditionalInfo.value as value -> lmClinical.Comments = value "set Comments";
    } "set";
  } "set clinical";
}

group mapLaboratoryResults(source qrLaboratoryResults, target lmLaboratoryResults : LaboratoryResultsLogicalModel) {
  qrLaboratoryResults.item as item then {
    item.answer first as answer where item.linkId = 'specimenNumber' then {
      answer.value as value -> lmLaboratoryResults.SpecimenNumber = value "set SpecimenNumber";
    } "set";
    item.answer first as answer where item.linkId = 'sampleType' then {
      answer.value as value -> lmLaboratoryResults.SampleType = value "set SampleType";
    } "set";
    item.answer first as answer where item.linkId = 'collectionDate' then {
      answer.value as value -> lmLaboratoryResults.SpecimenCollectionDate = value "set SpecimenCollectionDate";
    } "set";
    item.answer first as answer where item.linkId = 'labName' then {
      answer.value as value -> lmLaboratoryResults.LabName = value "set Shipment Date";
    } "set";
    item.answer first as answer where item.linkId = 'specimenSentDate' then {
      answer.value as value -> lmLaboratoryResults.SpecimenSentDate = value "set SpecimenSentDate";
    } "set";
    item.answer first as answer where item.linkId = 'specimenReceivedDate' then {
      answer.value as value -> lmLaboratoryResults.SpecimenRecdDate = value "set SpecimenRecdDate";
    } "set";
    item.answer first as answer where item.linkId = 'sampleId' then {
      answer.value as value -> lmLaboratoryResults.SampleId = value "set SampleId";
    } "set";
    item.answer first as answer where item.linkId = 'testPerformed' then {
      answer.value as value -> lmLaboratoryResults.TypeOfTest = value "set TypeOfTest";
    } "set";
    item.answer first as answer where item.linkId = 'antigen' then {
      answer.value as value -> lmLaboratoryResults.Antigen = value "set Antigen";
    } "set";
    item.answer first as answer where item.linkId = 'result' then {
      answer.value as value -> lmLaboratoryResults.Results = value "set Results";
    } "set";
    item.answer first as answer where item.linkId = 'resultDate' then {
      answer.value as value -> lmLaboratoryResults.LabResultsDate = value "set LabResultsDate  ";
    } "set";
    item.answer first as answer where item.linkId = 'specifyVirus' then {
      answer.value as value -> lmLaboratoryResults.ViralGenotype = value "set specify virus";
    } "set";
  } "set labs";
}

group mapTravelDetails(source qrTravelDetails, target lmContactTracing : SOTMeaslesContactTracing) {
  qrTravelDetails.answer first as answer where item.linkId = 'placeOfTravel' then {
    answer.value as value -> lmTravelDetails.placeOfTravel = value "set specify virus";
  } "set";
  qrTravelDetails.answer first as answer where item.linkId = 'arrivalDate' then {
    answer.value as value -> lmTravelDetails.arrivalDate = value "set specify virus";
  } "set";
  qrTravelDetails.answer first as answer where item.linkId = 'departureDate' then {
    answer.value as value -> lmTravelDetails.departureDate = value "set specify virus";
  } "set";
}

group mapContactTracing(source qrContactTracing, target lmContactTracing : SOTMeaslesContactTracing) {
  qrContactTracing.item as item then {
    item.answer first as answer where item.linkId = 'caseSearchConducted' then {
      answer.value as value -> lmContactTracing.caseSearchConducted = value "set specify virus";
    } "set";
    item.answer first as answer where item.linkId = 'noOfsuspectCases' then {
      answer.value as value -> lmContactTracing.noOfsuspectCases = value "set specify virus";
    } "set";
    item.answer first as answer where item.linkId = 'pregnantContact' then {
      answer.value as value -> lmContactTracing.pregnantContact = value "set specify virus";
    } "set";
    item.answer first as answer where item.linkId = 'pregnantContactNames' then {
      answer.value as value -> lmContactTracing.pregnantContactNames = value "set specify virus";
    } "set";
    item.answer first as answer where item.linkId = 'localCasesPresent' then {
      answer.value as value -> lmContactTracing.localCasesPresent = value "set specify virus";
    } "set";
    item.answer first as answer where item.linkId = 'travelledOutside' then {
      answer.value as value -> lmContactTracing.travelledOutside = value "set specify virus";
    } "set";
    item.answer first as qrTravelDetails where item.linkId = 'travelDetails' -> create('http://worldhealthorganization.github.io/smart-ot/StructureDefinition/SOTT1ExposureTravelHistory') as tgtTravelDetails then {
      qrTravelDetails -> qrTravelDetails then mapTravelDetails(qrTravelDetails, tgtTravelDetails) "d";
      qrTravelDetails -> lmContactTracing.travelDetails = tgtTravelDetails "set";
    } "set";
    item.answer first as answer where item.linkId = 'infectionSetting' then {
      answer.value as value -> lmContactTracing.infectionSetting = value "set specify virus";
    } "set";
    item.answer first as answer where item.linkId = 'specifyInfectionSetting' then {
      answer.value as value -> lmContactTracing.specifyInfectionSetting = value "set specify virus";
    } "set";
  } "set contact tracing";
}

group mapEpiData(source qrEpiData, target lmEpiData : EpiDataLogicalModel) {
  qrEpiData.item as item then {
    item.answer first as answer where item.linkId = 'ringVaccination' then {
      answer.value as value -> lmEpiData.ringVaccination = value "set finalClassification";
    } "set";
    item.answer first as answer where item.linkId = 'dateStarted' then {
      answer.value as value -> lmEpiData.dateStarted = value "set finalClassification";
    } "set";
    item.answer first as answer where item.linkId = 'dateEnded' then {
      answer.value as value -> lmEpiData.dateEnded = value "set finalClassification";
    } "set";
    item.answer first as answer where item.linkId = 'noOfDosesRingVaccination' then {
      answer.value as value -> lmEpiData.noOfDosesRingVaccination = value "set finalClassification";
    } "set";
    item.answer first as answer where item.linkId = 'rapidCoverageMonitioring' then {
      answer.value as value -> lmEpiData.rapidCoverageMonitioring = value "set finalClassification";
    } "set";
    item.answer first as answer where item.linkId = 'percentVaccinated' then {
      answer.value as value -> lmEpiData.percentVaccinated = value "set finalClassification";
    } "set";
    item.answer first as answer where item.linkId = 'contactTracingDone' then {
      answer.value as value -> lmEpiData.contactTracingDone = value "set finalClassification";
    } "set";
    item.answer first as answer where item.linkId = 'lastFollowUp' then {
      answer.value as value -> lmEpiData.lastFollowUp = value "set finalClassification";
    } "set";
  } "set epi data";
}

group mapClassification(source qrClassification, target lmClassification : ClassificationLogicalModel) {
  qrClassification.item as item then {
    item.answer first as answer where item.linkId = 'finalClassification' then {
      answer.value as value -> lmClassification.FinalClassification = value "set finalClassification";
    } "set";
    item.answer first as answer where item.linkId = 'confirmationBasis' then {
      answer.value as value -> lmClassification.ConfirmationBasis = value "set confirmationBasis";
    } "set";
    item.answer first as answer where item.linkId = 'source' then {
      answer.value as value -> lmClassification.Source = value "set source";
    } "set";
    item.answer first as answer where item.linkId = 'countryImportation' then {
      answer.value as value -> lmClassification.CountryImportation = value "set countryImportation";
    } "set";
    item.answer first as answer where item.linkId = 'discardingBasis' then {
      answer.value as value -> lmClassification.DiscardingBasis = value "set discardingBasis";
    } "set";
    item.answer first as answer where item.linkId = 'contact' then {
      answer.value as value -> lmClassification.Contact = value "set contact";
    } "set";
    item.answer first as answer where item.linkId = 'contactCaseNo' then {
      answer.value as value -> lmClassification.ContactCaseNo = value "set contactCaseNo";
    } "set";
    item.answer first as answer where item.linkId = 'classifiedBy' then {
      answer.value as value -> lmClassification.ClassifiedBy = value "set classifiedBy";
    } "set";
    item.answer first as answer where item.linkId = 'classificationDate' then {
      answer.value as value -> lmClassification.ClassificationDate = value "set classificationDate";
    } "set";
  } "set classification";
}