WHO SMART Guideline: Surveillance and Outbreak Toolkit
0.2.1 - CI Build
WHO SMART Guideline: Surveillance and Outbreak Toolkit, published by WHO. This is not an authorized publication; it is the continuous build for version 0.2.1. This version is based on the current content of https://github.com/WorldHealthOrganization/smart-ot and changes regularly. See the Directory of published versions
| Draft as of 2023-11-07 |
Definitions for the SOTT1Laboratory logical model.
Guidance on how to interpret the contents of this table can be found here
| 0. SOTT1Laboratory | |
| Short | Surveillance & Outbreak Toolkit T1 - Laboratory |
| Logical Model | Instances of this logical model are not marked to be the target of a Reference |
| 2. SOTT1Laboratory.laboratoryId | |
| Definition | Laboratory identification assigned to the case. |
| Short | Laboratory ID: |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 4. SOTT1Laboratory.labName | |
| Definition | Name of testing laboratory. |
| Short | Name of testing laboratory: |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 6. SOTT1Laboratory.labLocation | |
| Definition | Location of testing laboratory. |
| Short | Location of testing laboratory |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 8. SOTT1Laboratory.antibioticReceived | |
| Definition | Did the patient received antibiotic prior to specimen collection? |
| Short | Did the patient received antibiotic prior to specimen collection? |
| Control | 0..1 |
| Binding | The codes SHALL be taken from SOT Yes No |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 10. SOTT1Laboratory.labTests | |
| Definition | Details of tests performed |
| Short | Details of tests performed |
| Control | 0..* |
| Type | BackboneElement |
| 12. SOTT1Laboratory.labTests.sampleId | |
| Definition | First Sample ID |
| Short | Sample ID |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 14. SOTT1Laboratory.labTests.sampleType | |
| Definition | Type of specimen (blood, stool, CSF, skin smear…..) |
| Short | Type of specimen (blood, stool, CSF, skin smear…..) |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 16. SOTT1Laboratory.labTests.collectionDate | |
| Definition | Collection date |
| Short | Collection date |
| Control | 0..1 |
| Type | date |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 18. SOTT1Laboratory.labTests.testPerformedDate | |
| Definition | Date of test performed |
| Short | Date of test performed |
| Control | 0..1 |
| Type | date |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 20. SOTT1Laboratory.labTests.testPerformed | |
| Definition | Test performed |
| Short | Test performed |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 22. SOTT1Laboratory.labTests.result | |
| Definition | Result |
| Short | Result |
| Control | 0..1 |
| Binding | The codes SHALL be taken from Results |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 24. SOTT1Laboratory.proteinuria | |
| Definition | Record laboratory test results: Proteinuria |
| Short | Proteinuria |
| Control | 0..1 |
| Binding | The codes SHALL be taken from Yes No Unknown |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 26. SOTT1Laboratory.hematuria | |
| Definition | Record laboratory test results: Hematuria |
| Short | Hematuria |
| Control | 0..1 |
| Binding | The codes SHALL be taken from Yes No Unknown |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 28. SOTT1Laboratory.haemoglobin | |
| Definition | Record laboratory test results: Haemoglobin (g/l) |
| Short | Haemoglobin (g/l) |
| Control | 0..1 |
| Type | Quantity |
| 30. SOTT1Laboratory.WBC | |
| Definition | Record laboratory test results: WBC count |
| Short | WBC count |
| Control | 0..1 |
| Type | Quantity |
| 32. SOTT1Laboratory.platelet | |
| Definition | Record laboratory test results: Platelets |
| Short | Platelets |
| Control | 0..1 |
| Type | Quantity |
| 34. SOTT1Laboratory.CRP | |
| Definition | Record laboratory test results: CRP: |
| Short | CRP: |
| Control | 0..1 |
| Type | Quantity |
| 36. SOTT1Laboratory.potassium | |
| Definition | Record laboratory test results: Potassium |
| Short | Potassium |
| Control | 0..1 |
| Type | Quantity |
| 38. SOTT1Laboratory.ALT | |
| Definition | Record laboratory test results: ALT/SGPT |
| Short | ALT/SGPT |
| Control | 0..1 |
| Type | Quantity |
| 40. SOTT1Laboratory.AST | |
| Definition | Record laboratory test results: AST/SGOT |
| Short | AST/SGOT |
| Control | 0..1 |
| Type | Quantity |
| 42. SOTT1Laboratory.lactate | |
| Definition | Record laboratory test results: Lactate |
| Short | Lactate |
| Control | 0..1 |
| Type | Quantity |
| 44. SOTT1Laboratory.totalBilirubin | |
| Definition | Record laboratory test results: Total bilirubin |
| Short | Total bilirubin |
| Control | 0..1 |
| Type | Quantity |
| 46. SOTT1Laboratory.creatinine | |
| Definition | Record laboratory test results: Creatinine |
| Short | Creatinine |
| Control | 0..1 |
| Type | Quantity |
| 48. SOTT1Laboratory.urea | |
| Definition | Record laboratory test results: Urea |
| Short | Urea |
| Control | 0..1 |
| Type | Quantity |
| 50. SOTT1Laboratory.kinase | |
| Definition | Record laboratory test results: Creatine kinase |
| Short | Creatine kinase |
| Control | 0..1 |
| Type | Quantity |
| 52. SOTT1Laboratory.otherBloodTest | |
| Definition | Describe additional blood tests and give the results |
| Short | Other blood test: |
| Control | 0..1 |
| Type | Quantity |
| 54. SOTT1Laboratory.bloodGas | |
| Definition | Record laboratory test results: Blood gasses analysis |
| Short | Blood gasses analysis |
| Control | 0..1 |
| Binding | The codes SHALL be taken from SOT Yes No |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 56. SOTT1Laboratory.arterialBloodPH | |
| Definition | Record laboratory test results: Arterial blood PH |
| Short | Arterial blood PH |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 58. SOTT1Laboratory.bicarbonates | |
| Definition | Record laboratory test results: Bicarbonates |
| Short | Bicarbonates |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 60. SOTT1Laboratory.PO2 | |
| Definition | Record laboratory test results: Partial pressure of oxygen |
| Short | Partial pressure of oxygen |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 62. SOTT1Laboratory.PCO2 | |
| Definition | Record laboratory test results: Partial pressure of carbon dioxide |
| Short | Partial pressure of carbon dioxide |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 64. SOTT1Laboratory.O2SAT | |
| Definition | Record laboratory test results: Oxygen saturation |
| Short | Oxygen saturation |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 66. SOTT1Laboratory.otherTestsPerformed | |
| Definition | Other tests performed and results (even negative results) |
| Short | Other tests performed and results (even negative results) |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 68. SOTT1Laboratory.labConclusion | |
| Definition | Evaluate the laboratory test results and draw a conclusion from these results |
| Short | Laboratory conclusion |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 70. SOTT1Laboratory.environmentSampleTaken | |
| Definition | Where any environmental samples taken and submitted to a laboratory |
| Short | Environmental samples taken |
| Control | 0..1 |
| Binding | The codes SHALL be taken from SOT Yes No |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 72. SOTT1Laboratory.environmentSampleDetails | |
| Definition | Details of environment sample |
| Short | Details of environment sample |
| Control | 0..1 |
| Type | BackboneElement |
| 74. SOTT1Laboratory.environmentSampleDetails.environmentSample | |
| Definition | Describe the environmental samples (soil, water, air, etc) |
| Short | Products |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 76. SOTT1Laboratory.environmentSampleDetails.collectionDate | |
| Definition | When where these environmental samples taken |
| Short | Date of collection |
| Control | 0..1 |
| Type | date |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 78. SOTT1Laboratory.animalSampleTaken | |
| Definition | Where any animal samples taken and submitted to the laboratory (blood, oropharyngeal swabs, tissue, brain, feaces, etc) |
| Short | Animal samples taken |
| Control | 0..1 |
| Binding | The codes SHALL be taken from SOT Yes No |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 80. SOTT1Laboratory.animalSampleDetails | |
| Definition | Details of animal sample |
| Short | Details of animal sample |
| Control | 0..1 |
| Type | BackboneElement |
| 82. SOTT1Laboratory.animalSampleDetails.animalSample | |
| Definition | What kind of animal samples were taken (blood, oropharyngeal swabs, tissue, brain, feaces, etc) |
| Short | Products |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 84. SOTT1Laboratory.animalSampleDetails.collectionDate | |
| Definition | When were animal samples taken? |
| Short | Date of collection |
| Control | 0..1 |
| Type | date |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
Guidance on how to interpret the contents of this table can be found here
| 0. SOTT1Laboratory | |
| Definition | Base definition for all elements that are defined inside a resource - but not those in a data type. |
| Short | Surveillance & Outbreak Toolkit T1 - LaboratoryBase for elements defined inside a resource |
| Control | 0..* This element is affected by the following invariants: ele-1 |
| Is Modifier | false |
| Logical Model | Instances of this logical model are not marked to be the target of a Reference |
| Invariants | ele-1: All FHIR elements must have a @value or children (hasValue() or (children().count() > id.count())) |
| 2. SOTT1Laboratory.modifierExtension | |
| Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). |
| Short | Extensions that cannot be ignored even if unrecognized |
| Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. |
| Control | 0..* |
| Type | Extension |
| Is Modifier | true because Modifier extensions are expected to modify the meaning or interpretation of the element that contains them |
| Summary | true |
| Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. |
| Alternate Names | extensions, user content, modifiers |
| Invariants | ele-1: All FHIR elements must have a @value or children (hasValue() or (children().count() > id.count())) ext-1: Must have either extensions or value[x], not both (extension.exists() != value.exists()) |
| 4. SOTT1Laboratory.laboratoryId | |
| Definition | Laboratory identification assigned to the case. |
| Short | Laboratory ID: |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 6. SOTT1Laboratory.labName | |
| Definition | Name of testing laboratory. |
| Short | Name of testing laboratory: |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 8. SOTT1Laboratory.labLocation | |
| Definition | Location of testing laboratory. |
| Short | Location of testing laboratory |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 10. SOTT1Laboratory.antibioticReceived | |
| Definition | Did the patient received antibiotic prior to specimen collection? |
| Short | Did the patient received antibiotic prior to specimen collection? |
| Control | 0..1 |
| Binding | The codes SHALL be taken from SOT Yes No |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 12. SOTT1Laboratory.labTests | |
| Definition | Details of tests performed |
| Short | Details of tests performed |
| Control | 0..* |
| Type | BackboneElement |
| Invariants | ele-1: All FHIR elements must have a @value or children (hasValue() or (children().count() > id.count())) |
| 14. SOTT1Laboratory.labTests.modifierExtension | |
| Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). |
| Short | Extensions that cannot be ignored even if unrecognized |
| Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. |
| Control | 0..* |
| Type | Extension |
| Is Modifier | true because Modifier extensions are expected to modify the meaning or interpretation of the element that contains them |
| Summary | true |
| Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. |
| Alternate Names | extensions, user content, modifiers |
| Invariants | ele-1: All FHIR elements must have a @value or children (hasValue() or (children().count() > id.count())) ext-1: Must have either extensions or value[x], not both (extension.exists() != value.exists()) |
| 16. SOTT1Laboratory.labTests.sampleId | |
| Definition | First Sample ID |
| Short | Sample ID |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 18. SOTT1Laboratory.labTests.sampleType | |
| Definition | Type of specimen (blood, stool, CSF, skin smear…..) |
| Short | Type of specimen (blood, stool, CSF, skin smear…..) |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 20. SOTT1Laboratory.labTests.collectionDate | |
| Definition | Collection date |
| Short | Collection date |
| Control | 0..1 |
| Type | date |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 22. SOTT1Laboratory.labTests.testPerformedDate | |
| Definition | Date of test performed |
| Short | Date of test performed |
| Control | 0..1 |
| Type | date |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 24. SOTT1Laboratory.labTests.testPerformed | |
| Definition | Test performed |
| Short | Test performed |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 26. SOTT1Laboratory.labTests.result | |
| Definition | Result |
| Short | Result |
| Control | 0..1 |
| Binding | The codes SHALL be taken from Results |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 28. SOTT1Laboratory.proteinuria | |
| Definition | Record laboratory test results: Proteinuria |
| Short | Proteinuria |
| Control | 0..1 |
| Binding | The codes SHALL be taken from Yes No Unknown |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 30. SOTT1Laboratory.hematuria | |
| Definition | Record laboratory test results: Hematuria |
| Short | Hematuria |
| Control | 0..1 |
| Binding | The codes SHALL be taken from Yes No Unknown |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 32. SOTT1Laboratory.haemoglobin | |
| Definition | Record laboratory test results: Haemoglobin (g/l) |
| Short | Haemoglobin (g/l) |
| Control | 0..1 |
| Type | Quantity |
| 34. SOTT1Laboratory.WBC | |
| Definition | Record laboratory test results: WBC count |
| Short | WBC count |
| Control | 0..1 |
| Type | Quantity |
| 36. SOTT1Laboratory.platelet | |
| Definition | Record laboratory test results: Platelets |
| Short | Platelets |
| Control | 0..1 |
| Type | Quantity |
| 38. SOTT1Laboratory.CRP | |
| Definition | Record laboratory test results: CRP: |
| Short | CRP: |
| Control | 0..1 |
| Type | Quantity |
| 40. SOTT1Laboratory.potassium | |
| Definition | Record laboratory test results: Potassium |
| Short | Potassium |
| Control | 0..1 |
| Type | Quantity |
| 42. SOTT1Laboratory.ALT | |
| Definition | Record laboratory test results: ALT/SGPT |
| Short | ALT/SGPT |
| Control | 0..1 |
| Type | Quantity |
| 44. SOTT1Laboratory.AST | |
| Definition | Record laboratory test results: AST/SGOT |
| Short | AST/SGOT |
| Control | 0..1 |
| Type | Quantity |
| 46. SOTT1Laboratory.lactate | |
| Definition | Record laboratory test results: Lactate |
| Short | Lactate |
| Control | 0..1 |
| Type | Quantity |
| 48. SOTT1Laboratory.totalBilirubin | |
| Definition | Record laboratory test results: Total bilirubin |
| Short | Total bilirubin |
| Control | 0..1 |
| Type | Quantity |
| 50. SOTT1Laboratory.creatinine | |
| Definition | Record laboratory test results: Creatinine |
| Short | Creatinine |
| Control | 0..1 |
| Type | Quantity |
| 52. SOTT1Laboratory.urea | |
| Definition | Record laboratory test results: Urea |
| Short | Urea |
| Control | 0..1 |
| Type | Quantity |
| 54. SOTT1Laboratory.kinase | |
| Definition | Record laboratory test results: Creatine kinase |
| Short | Creatine kinase |
| Control | 0..1 |
| Type | Quantity |
| 56. SOTT1Laboratory.otherBloodTest | |
| Definition | Describe additional blood tests and give the results |
| Short | Other blood test: |
| Control | 0..1 |
| Type | Quantity |
| 58. SOTT1Laboratory.bloodGas | |
| Definition | Record laboratory test results: Blood gasses analysis |
| Short | Blood gasses analysis |
| Control | 0..1 |
| Binding | The codes SHALL be taken from SOT Yes No |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 60. SOTT1Laboratory.arterialBloodPH | |
| Definition | Record laboratory test results: Arterial blood PH |
| Short | Arterial blood PH |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 62. SOTT1Laboratory.bicarbonates | |
| Definition | Record laboratory test results: Bicarbonates |
| Short | Bicarbonates |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 64. SOTT1Laboratory.PO2 | |
| Definition | Record laboratory test results: Partial pressure of oxygen |
| Short | Partial pressure of oxygen |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 66. SOTT1Laboratory.PCO2 | |
| Definition | Record laboratory test results: Partial pressure of carbon dioxide |
| Short | Partial pressure of carbon dioxide |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 68. SOTT1Laboratory.O2SAT | |
| Definition | Record laboratory test results: Oxygen saturation |
| Short | Oxygen saturation |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 70. SOTT1Laboratory.otherTestsPerformed | |
| Definition | Other tests performed and results (even negative results) |
| Short | Other tests performed and results (even negative results) |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 72. SOTT1Laboratory.labConclusion | |
| Definition | Evaluate the laboratory test results and draw a conclusion from these results |
| Short | Laboratory conclusion |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 74. SOTT1Laboratory.environmentSampleTaken | |
| Definition | Where any environmental samples taken and submitted to a laboratory |
| Short | Environmental samples taken |
| Control | 0..1 |
| Binding | The codes SHALL be taken from SOT Yes No |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 76. SOTT1Laboratory.environmentSampleDetails | |
| Definition | Details of environment sample |
| Short | Details of environment sample |
| Control | 0..1 |
| Type | BackboneElement |
| Invariants | ele-1: All FHIR elements must have a @value or children (hasValue() or (children().count() > id.count())) |
| 78. SOTT1Laboratory.environmentSampleDetails.modifierExtension | |
| Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). |
| Short | Extensions that cannot be ignored even if unrecognized |
| Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. |
| Control | 0..* |
| Type | Extension |
| Is Modifier | true because Modifier extensions are expected to modify the meaning or interpretation of the element that contains them |
| Summary | true |
| Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. |
| Alternate Names | extensions, user content, modifiers |
| Invariants | ele-1: All FHIR elements must have a @value or children (hasValue() or (children().count() > id.count())) ext-1: Must have either extensions or value[x], not both (extension.exists() != value.exists()) |
| 80. SOTT1Laboratory.environmentSampleDetails.environmentSample | |
| Definition | Describe the environmental samples (soil, water, air, etc) |
| Short | Products |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 82. SOTT1Laboratory.environmentSampleDetails.collectionDate | |
| Definition | When where these environmental samples taken |
| Short | Date of collection |
| Control | 0..1 |
| Type | date |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 84. SOTT1Laboratory.animalSampleTaken | |
| Definition | Where any animal samples taken and submitted to the laboratory (blood, oropharyngeal swabs, tissue, brain, feaces, etc) |
| Short | Animal samples taken |
| Control | 0..1 |
| Binding | The codes SHALL be taken from SOT Yes No |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 86. SOTT1Laboratory.animalSampleDetails | |
| Definition | Details of animal sample |
| Short | Details of animal sample |
| Control | 0..1 |
| Type | BackboneElement |
| Invariants | ele-1: All FHIR elements must have a @value or children (hasValue() or (children().count() > id.count())) |
| 88. SOTT1Laboratory.animalSampleDetails.modifierExtension | |
| Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). |
| Short | Extensions that cannot be ignored even if unrecognized |
| Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. |
| Control | 0..* |
| Type | Extension |
| Is Modifier | true because Modifier extensions are expected to modify the meaning or interpretation of the element that contains them |
| Summary | true |
| Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. |
| Alternate Names | extensions, user content, modifiers |
| Invariants | ele-1: All FHIR elements must have a @value or children (hasValue() or (children().count() > id.count())) ext-1: Must have either extensions or value[x], not both (extension.exists() != value.exists()) |
| 90. SOTT1Laboratory.animalSampleDetails.animalSample | |
| Definition | What kind of animal samples were taken (blood, oropharyngeal swabs, tissue, brain, feaces, etc) |
| Short | Products |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 92. SOTT1Laboratory.animalSampleDetails.collectionDate | |
| Definition | When were animal samples taken? |
| Short | Date of collection |
| Control | 0..1 |
| Type | date |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
Guidance on how to interpret the contents of this table can be found here
| 0. SOTT1Laboratory | |
| Definition | Base definition for all elements that are defined inside a resource - but not those in a data type. |
| Short | Surveillance & Outbreak Toolkit T1 - Laboratory |
| Control | 0..* This element is affected by the following invariants: ele-1 |
| Is Modifier | false |
| Logical Model | Instances of this logical model are not marked to be the target of a Reference |
| Invariants | ele-1: All FHIR elements must have a @value or children (hasValue() or (children().count() > id.count())) |
| 2. SOTT1Laboratory.id | |
| Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. |
| Short | Unique id for inter-element referencing |
| Control | 0..1 |
| Type | string |
| Is Modifier | false |
| XML Format | In the XML format, this property is represented as an attribute. |
| Summary | false |
| 4. SOTT1Laboratory.extension | |
| Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. |
| Short | Additional content defined by implementations |
| Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. |
| Control | 0..* |
| Type | Extension |
| Is Modifier | false |
| Summary | false |
| Alternate Names | extensions, user content |
| Invariants | ele-1: All FHIR elements must have a @value or children (hasValue() or (children().count() > id.count()))ext-1: Must have either extensions or value[x], not both ( extension.exists() != value.exists()) |
| Slicing | This element introduces a set of slices on SOTT1Laboratory.extension. The slices are unordered and Open, and can be differentiated using the following discriminators: , and can be differentiated using the following discriminators: |
| 6. SOTT1Laboratory.modifierExtension | |
| Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. |
| Short | Extensions that cannot be ignored even if unrecognized |
| Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. |
| Control | 0..* |
| Type | Extension |
| Is Modifier | true because Modifier extensions are expected to modify the meaning or interpretation of the element that contains them |
| Summary | true |
| Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. |
| Alternate Names | extensions, user content, modifiers |
| Invariants | ele-1: All FHIR elements must have a @value or children (hasValue() or (children().count() > id.count()))ext-1: Must have either extensions or value[x], not both ( extension.exists() != value.exists()) |
| 8. SOTT1Laboratory.laboratoryId | |
| Definition | Laboratory identification assigned to the case. |
| Short | Laboratory ID: |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 10. SOTT1Laboratory.labName | |
| Definition | Name of testing laboratory. |
| Short | Name of testing laboratory: |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 12. SOTT1Laboratory.labLocation | |
| Definition | Location of testing laboratory. |
| Short | Location of testing laboratory |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 14. SOTT1Laboratory.antibioticReceived | |
| Definition | Did the patient received antibiotic prior to specimen collection? |
| Short | Did the patient received antibiotic prior to specimen collection? |
| Control | 0..1 |
| Binding | The codes SHALL be taken from SOT Yes No |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 16. SOTT1Laboratory.labTests | |
| Definition | Details of tests performed |
| Short | Details of tests performed |
| Control | 0..* |
| Type | BackboneElement |
| Invariants | ele-1: All FHIR elements must have a @value or children (hasValue() or (children().count() > id.count())) |
| 18. SOTT1Laboratory.labTests.id | |
| Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. |
| Short | Unique id for inter-element referencing |
| Control | 0..1 |
| Type | string |
| Is Modifier | false |
| XML Format | In the XML format, this property is represented as an attribute. |
| Summary | false |
| 20. SOTT1Laboratory.labTests.extension | |
| Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. |
| Short | Additional content defined by implementations |
| Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. |
| Control | 0..* |
| Type | Extension |
| Is Modifier | false |
| Summary | false |
| Alternate Names | extensions, user content |
| Invariants | ele-1: All FHIR elements must have a @value or children (hasValue() or (children().count() > id.count()))ext-1: Must have either extensions or value[x], not both ( extension.exists() != value.exists()) |
| Slicing | This element introduces a set of slices on SOTT1Laboratory.labTests.extension. The slices are unordered and Open, and can be differentiated using the following discriminators: , and can be differentiated using the following discriminators: |
| 22. SOTT1Laboratory.labTests.modifierExtension | |
| Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. |
| Short | Extensions that cannot be ignored even if unrecognized |
| Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. |
| Control | 0..* |
| Type | Extension |
| Is Modifier | true because Modifier extensions are expected to modify the meaning or interpretation of the element that contains them |
| Summary | true |
| Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. |
| Alternate Names | extensions, user content, modifiers |
| Invariants | ele-1: All FHIR elements must have a @value or children (hasValue() or (children().count() > id.count()))ext-1: Must have either extensions or value[x], not both ( extension.exists() != value.exists()) |
| 24. SOTT1Laboratory.labTests.sampleId | |
| Definition | First Sample ID |
| Short | Sample ID |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 26. SOTT1Laboratory.labTests.sampleType | |
| Definition | Type of specimen (blood, stool, CSF, skin smear…..) |
| Short | Type of specimen (blood, stool, CSF, skin smear…..) |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 28. SOTT1Laboratory.labTests.collectionDate | |
| Definition | Collection date |
| Short | Collection date |
| Control | 0..1 |
| Type | date |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 30. SOTT1Laboratory.labTests.testPerformedDate | |
| Definition | Date of test performed |
| Short | Date of test performed |
| Control | 0..1 |
| Type | date |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 32. SOTT1Laboratory.labTests.testPerformed | |
| Definition | Test performed |
| Short | Test performed |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 34. SOTT1Laboratory.labTests.result | |
| Definition | Result |
| Short | Result |
| Control | 0..1 |
| Binding | The codes SHALL be taken from Results |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 36. SOTT1Laboratory.proteinuria | |
| Definition | Record laboratory test results: Proteinuria |
| Short | Proteinuria |
| Control | 0..1 |
| Binding | The codes SHALL be taken from Yes No Unknown |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 38. SOTT1Laboratory.hematuria | |
| Definition | Record laboratory test results: Hematuria |
| Short | Hematuria |
| Control | 0..1 |
| Binding | The codes SHALL be taken from Yes No Unknown |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 40. SOTT1Laboratory.haemoglobin | |
| Definition | Record laboratory test results: Haemoglobin (g/l) |
| Short | Haemoglobin (g/l) |
| Control | 0..1 |
| Type | Quantity |
| 42. SOTT1Laboratory.WBC | |
| Definition | Record laboratory test results: WBC count |
| Short | WBC count |
| Control | 0..1 |
| Type | Quantity |
| 44. SOTT1Laboratory.platelet | |
| Definition | Record laboratory test results: Platelets |
| Short | Platelets |
| Control | 0..1 |
| Type | Quantity |
| 46. SOTT1Laboratory.CRP | |
| Definition | Record laboratory test results: CRP: |
| Short | CRP: |
| Control | 0..1 |
| Type | Quantity |
| 48. SOTT1Laboratory.potassium | |
| Definition | Record laboratory test results: Potassium |
| Short | Potassium |
| Control | 0..1 |
| Type | Quantity |
| 50. SOTT1Laboratory.ALT | |
| Definition | Record laboratory test results: ALT/SGPT |
| Short | ALT/SGPT |
| Control | 0..1 |
| Type | Quantity |
| 52. SOTT1Laboratory.AST | |
| Definition | Record laboratory test results: AST/SGOT |
| Short | AST/SGOT |
| Control | 0..1 |
| Type | Quantity |
| 54. SOTT1Laboratory.lactate | |
| Definition | Record laboratory test results: Lactate |
| Short | Lactate |
| Control | 0..1 |
| Type | Quantity |
| 56. SOTT1Laboratory.totalBilirubin | |
| Definition | Record laboratory test results: Total bilirubin |
| Short | Total bilirubin |
| Control | 0..1 |
| Type | Quantity |
| 58. SOTT1Laboratory.creatinine | |
| Definition | Record laboratory test results: Creatinine |
| Short | Creatinine |
| Control | 0..1 |
| Type | Quantity |
| 60. SOTT1Laboratory.urea | |
| Definition | Record laboratory test results: Urea |
| Short | Urea |
| Control | 0..1 |
| Type | Quantity |
| 62. SOTT1Laboratory.kinase | |
| Definition | Record laboratory test results: Creatine kinase |
| Short | Creatine kinase |
| Control | 0..1 |
| Type | Quantity |
| 64. SOTT1Laboratory.otherBloodTest | |
| Definition | Describe additional blood tests and give the results |
| Short | Other blood test: |
| Control | 0..1 |
| Type | Quantity |
| 66. SOTT1Laboratory.bloodGas | |
| Definition | Record laboratory test results: Blood gasses analysis |
| Short | Blood gasses analysis |
| Control | 0..1 |
| Binding | The codes SHALL be taken from SOT Yes No |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 68. SOTT1Laboratory.arterialBloodPH | |
| Definition | Record laboratory test results: Arterial blood PH |
| Short | Arterial blood PH |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 70. SOTT1Laboratory.bicarbonates | |
| Definition | Record laboratory test results: Bicarbonates |
| Short | Bicarbonates |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 72. SOTT1Laboratory.PO2 | |
| Definition | Record laboratory test results: Partial pressure of oxygen |
| Short | Partial pressure of oxygen |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 74. SOTT1Laboratory.PCO2 | |
| Definition | Record laboratory test results: Partial pressure of carbon dioxide |
| Short | Partial pressure of carbon dioxide |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 76. SOTT1Laboratory.O2SAT | |
| Definition | Record laboratory test results: Oxygen saturation |
| Short | Oxygen saturation |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 78. SOTT1Laboratory.otherTestsPerformed | |
| Definition | Other tests performed and results (even negative results) |
| Short | Other tests performed and results (even negative results) |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 80. SOTT1Laboratory.labConclusion | |
| Definition | Evaluate the laboratory test results and draw a conclusion from these results |
| Short | Laboratory conclusion |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 82. SOTT1Laboratory.environmentSampleTaken | |
| Definition | Where any environmental samples taken and submitted to a laboratory |
| Short | Environmental samples taken |
| Control | 0..1 |
| Binding | The codes SHALL be taken from SOT Yes No |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 84. SOTT1Laboratory.environmentSampleDetails | |
| Definition | Details of environment sample |
| Short | Details of environment sample |
| Control | 0..1 |
| Type | BackboneElement |
| Invariants | ele-1: All FHIR elements must have a @value or children (hasValue() or (children().count() > id.count())) |
| 86. SOTT1Laboratory.environmentSampleDetails.id | |
| Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. |
| Short | Unique id for inter-element referencing |
| Control | 0..1 |
| Type | string |
| Is Modifier | false |
| XML Format | In the XML format, this property is represented as an attribute. |
| Summary | false |
| 88. SOTT1Laboratory.environmentSampleDetails.extension | |
| Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. |
| Short | Additional content defined by implementations |
| Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. |
| Control | 0..* |
| Type | Extension |
| Is Modifier | false |
| Summary | false |
| Alternate Names | extensions, user content |
| Invariants | ele-1: All FHIR elements must have a @value or children (hasValue() or (children().count() > id.count()))ext-1: Must have either extensions or value[x], not both ( extension.exists() != value.exists()) |
| Slicing | This element introduces a set of slices on SOTT1Laboratory.environmentSampleDetails.extension. The slices are unordered and Open, and can be differentiated using the following discriminators: , and can be differentiated using the following discriminators: |
| 90. SOTT1Laboratory.environmentSampleDetails.modifierExtension | |
| Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. |
| Short | Extensions that cannot be ignored even if unrecognized |
| Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. |
| Control | 0..* |
| Type | Extension |
| Is Modifier | true because Modifier extensions are expected to modify the meaning or interpretation of the element that contains them |
| Summary | true |
| Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. |
| Alternate Names | extensions, user content, modifiers |
| Invariants | ele-1: All FHIR elements must have a @value or children (hasValue() or (children().count() > id.count()))ext-1: Must have either extensions or value[x], not both ( extension.exists() != value.exists()) |
| 92. SOTT1Laboratory.environmentSampleDetails.environmentSample | |
| Definition | Describe the environmental samples (soil, water, air, etc) |
| Short | Products |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 94. SOTT1Laboratory.environmentSampleDetails.collectionDate | |
| Definition | When where these environmental samples taken |
| Short | Date of collection |
| Control | 0..1 |
| Type | date |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 96. SOTT1Laboratory.animalSampleTaken | |
| Definition | Where any animal samples taken and submitted to the laboratory (blood, oropharyngeal swabs, tissue, brain, feaces, etc) |
| Short | Animal samples taken |
| Control | 0..1 |
| Binding | The codes SHALL be taken from SOT Yes No |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 98. SOTT1Laboratory.animalSampleDetails | |
| Definition | Details of animal sample |
| Short | Details of animal sample |
| Control | 0..1 |
| Type | BackboneElement |
| Invariants | ele-1: All FHIR elements must have a @value or children (hasValue() or (children().count() > id.count())) |
| 100. SOTT1Laboratory.animalSampleDetails.id | |
| Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. |
| Short | Unique id for inter-element referencing |
| Control | 0..1 |
| Type | string |
| Is Modifier | false |
| XML Format | In the XML format, this property is represented as an attribute. |
| Summary | false |
| 102. SOTT1Laboratory.animalSampleDetails.extension | |
| Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. |
| Short | Additional content defined by implementations |
| Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. |
| Control | 0..* |
| Type | Extension |
| Is Modifier | false |
| Summary | false |
| Alternate Names | extensions, user content |
| Invariants | ele-1: All FHIR elements must have a @value or children (hasValue() or (children().count() > id.count()))ext-1: Must have either extensions or value[x], not both ( extension.exists() != value.exists()) |
| Slicing | This element introduces a set of slices on SOTT1Laboratory.animalSampleDetails.extension. The slices are unordered and Open, and can be differentiated using the following discriminators: , and can be differentiated using the following discriminators: |
| 104. SOTT1Laboratory.animalSampleDetails.modifierExtension | |
| Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. |
| Short | Extensions that cannot be ignored even if unrecognized |
| Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. |
| Control | 0..* |
| Type | Extension |
| Is Modifier | true because Modifier extensions are expected to modify the meaning or interpretation of the element that contains them |
| Summary | true |
| Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. |
| Alternate Names | extensions, user content, modifiers |
| Invariants | ele-1: All FHIR elements must have a @value or children (hasValue() or (children().count() > id.count()))ext-1: Must have either extensions or value[x], not both ( extension.exists() != value.exists()) |
| 106. SOTT1Laboratory.animalSampleDetails.animalSample | |
| Definition | What kind of animal samples were taken (blood, oropharyngeal swabs, tissue, brain, feaces, etc) |
| Short | Products |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 108. SOTT1Laboratory.animalSampleDetails.collectionDate | |
| Definition | When were animal samples taken? |
| Short | Date of collection |
| Control | 0..1 |
| Type | date |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |