map "http://worldhealthorganization.github.io/smart-ot/StructureMap/MeaslesQuestionnaireToLogicalModel" = "MeaslesQuestionnaireToLogicalModel" uses "http://hl7.org/fhir/StructureDefinition/QuestionnaireResponse" alias QuestionnaireResponse as source uses "http://worldhealthorganization.github.io/smart-ot/StructureDefinition/SOTMeasles" alias MeaslesLogicalModel as target group MeaslesQuestionnaireToLogicalModel(source qr : QuestionnaireResponse, target measlesLm : SOTMeasles) { qr.item as item where linkId.value in ('investigationForm') -> measlesLm as measlesLm then mapInvestigationForm(item, measlesLm) "set Investigation form"; } group mapInvestigationForm(source investigationForm, target measlesLm : SOTMeasles) { investigationForm.item as qrReportingSource where linkId.value in ('reportingSource') -> measlesLm.ReportingSource as lmReportingSource then mapReportingSource(qrReportingSource, lmReportingSource) "set Reporting Source"; investigationForm.item as qrDemographics where linkId.value in ('demographics') -> measlesLm.Demographics as lmDemographics then mapDemographics(qrDemographics, lmDemographics) "set Demographics"; investigationForm.item as qrVaccinationStatus where linkId.value in ('vaccinationStatus') -> measlesLm.VaccinationStatus as lmVaccinationStatus then mapVaccinationStatus(qrVaccinationStatus, lmVaccinationStatus) "set Vaccination Status"; investigationForm.item as qrClinical where linkId.value in ('clinical') -> measlesLm.Clinical as lmClinical then mapClinical(qrClinical, lmClinical) "set Clinical"; investigationForm.item as qrLaboratoryResults where linkId.value in ('laboratoryResults') -> measlesLm.LaboratoryResults as lmLaboratoryResults then mapLaboratoryResults(qrLaboratoryResults, lmLaboratoryResults) "set Laboratory Results"; investigationForm.item as qrContactTracing where linkId.value in ('contactTracing') -> measlesLm.ContactTracing as lmContactTracing then mapContactTracing(qrContactTracing, lmContactTracing) "set Contact Tracing"; investigationForm.item as qrEpiData where linkId.value in ('epiData') -> measlesLm.EpiData as lmEpiData then mapEpiData(qrEpiData, lmEpiData) "set Epi Data"; investigationForm.item as qrClassification where linkId.value in ('classification') -> measlesLm.Classification as lmClassification then mapClassification(qrClassification, lmClassification) "set Classification"; } group mapReportingSource(source qrReportingSource, target lmReportingSource : SOTMeaslesReportingSource) { qrReportingSource.item as item then { item.answer first as initialDiagnosis where item.linkId = 'initialDiagnosis' then { initialDiagnosis.value as coding -> lmReportingSource.InitialDiagnosis = coding "set Initial Diagnosis"; } "set initial diag"; item.answer first as reportedBy where item.linkId = 'reportedBy' then { reportedBy.value as value -> lmReportingSource.ReportedBy = value "set case ID"; } "set case ID"; qrReportingSource.item as qrReportingInstitution where linkId.value in ('reportingInstitution') -> lmReportingSource as lmReportingSource then mapReportingInstitution(qrReportingInstitution, lmReportingSource) "set reporting institution"; item.answer first as dateOfConsultation where item.linkId = 'DateOfConsultation' then { dateOfConsultation.value as value -> lmReportingSource.DateOfConsultation = value "set date of consultation"; } "set date of consultation"; item.answer first as dateOfHomeVisit where item.linkId = 'DateOfHomeVisit' then { dateOfHomeVisit.value as value -> lmReportingSource.DateOfHomeVisit = value "set date of home visit"; } "set date of home visit"; item.answer first as dateReportedLocal where item.linkId = 'dateReported' then { dateReportedLocal.value as value -> lmReportingSource.DateReportedLocal = value "set date reported local"; } "set date reported local"; item.answer first as dateReportedNational where item.linkId = 'DateReportedNational' then { dateReportedNational.value as value -> lmReportingSource.DateReportedNational = value "set date reported national"; } "set date reported national"; item.answer first as providerType where item.linkId = 'TypeOfProviderReporting' then { providerType.value as value -> lmReportingSource.TypeOfProviderReporting = value "set provider type"; } "set provider type"; item.answer first as detectedBy where item.linkId = 'DetectedBy' then { detectedBy.value as value -> lmReportingSource.DetectedBy = value "set detected by"; } "set detected by"; } "set reporting source"; } group mapReportingInstitution(source qrReportingInstitution, target lmReportingSource : SOTMeaslesReportingSource) { qrReportingInstitution.item as item then { item.answer first as reportingFacility where item.linkId = 'reportingFacility' then { reportingFacility.value as healthFacilityName -> lmReportingSource.HealthServiceName = healthFacilityName "set health facility name"; } "set health facility name"; item.answer first as telephone where item.linkId = 'telephone' then { telephone.value as value -> create('ContactPoint') as lmTelephone, lmTelephone.value = value, lmReportingSource.HealthServiceTelephone = lmTelephone "set telephone"; } "set telephone"; qrReportingInstitution -> create('Address') as lmAddress then { item.answer first as country where item.linkId = 'country' then { country.value as countryValue -> lmAddress.country = countryValue "set country"; } "set country"; item.answer first as municipality where item.linkId = 'municipality' then { municipality.value as cityValue -> lmAddress.city = cityValue "set city"; } "set city "; item.answer first as state where item.linkId = 'state' then { state.value as stateValue -> lmAddress.state = stateValue "set state"; } "set state"; item.answer first as locality where item.linkId = 'locality' then { locality.value as localityValue -> lmAddress.line = localityValue "set locality"; } "set locality"; qrReportingInstitution -> lmReportingSource.PlaceOfReporting = lmAddress "assign address"; } "set address"; } "set reporting institution"; } group mapDemographics(source qrDemographics, target lmDemographics : SOTMeaslesDemographic) { qrDemographics.item as item then { item.answer first as name where item.linkId = 'name' then { name.value as nameValue -> create('HumanName') as lmName, lmName.family = nameValue, lmDemographics.Name = lmName "set name"; } "set name"; item.answer first as guardian where item.linkId = 'guardian' then { guardian.value as value -> create('HumanName') as lmGuardian, lmGuardian.family = value, lmDemographics.Guardian = lmGuardian "set guardian"; } "set guardian"; item.answer first as address where item.linkId = 'address' then { address.value as value -> create('Address') as lmAddress, lmAddress.text = value, lmDemographics.PlaceOfResidence = lmAddress "set address"; } "set address"; item.answer first as telephone where item.linkId = 'telephone' then { telephone.value as value -> create('ContactPoint') as lmTelephone, lmTelephone.value = value, lmDemographics.Telephone = lmTelephone "set telephone"; } "set telephone"; item.answer first as landmark where item.linkId = 'landmark' then { landmark.value as value -> lmDemographics.Landmark = value "set landmark"; } "set landmark"; item.answer first as occupation where item.linkId = 'occupation' then { occupation.value as value -> lmDemographics.Occupation = value "set occupation"; } "set occupation"; item.answer first as location where item.linkId = 'location living in' then { location.value as value -> locationlmDemographics.LocalityType = value "set Locality Type"; } "set Locality Type"; item.answer first as workAddress where item.linkId = 'workAddress' then { workAddress.value as value -> create('Address') as lmAddress, lmAddress.text = value, lmDemographics.WorkAddress = lmAddress "set workAddress"; } "set workAddress"; item.answer first as sex where item.linkId = 'sex' then { sex.value as value -> lmDemographics.Sex = value "set sex"; } "set sex"; item.answer first as DoB where item.linkId = 'DoB' then { DoB.value as value -> lmDemographics.DateOfBirth = value "set DoB"; } "set DoB"; item.answer first as ageOnset where item.linkId = 'ageOnset' then { ageOnset.value as value -> create('Quantity') as lmAgeOnset, lmAgeOnset.value = value, lmDemographics.Age = lmAgeOnset "set ageOnset"; } "set ageOnset"; } "set demographics"; } group mapVaccinationStatus(source qrVaccinationStatus, target lmVaccinationStatus : SOTMeaslesVaccinationStatus) { qrVaccinationStatus.item as item then { item.answer first as lastDoseDate where item.linkId = 'lastDoseDate' then { lastDoseDate.value as value -> lmVaccinationStatus.LastDoseDate = value "set Last Dose Date"; } "set last dose date"; item.answer first as sourceOfInformation where item.linkId = 'sourceOfInformation' then { sourceOfInformation.value as value -> lmVaccinationStatus.Source = value "set Source of Vaccination Information"; } "set"; item.answer first as noOfDoses where item.linkId = 'noOfDoses' then { noOfDoses.value as value -> lmVaccinationStatus.NumberOfDoses = value "set number of doses"; } "set"; item.answer first as vaccineType where item.linkId = 'vaccineType' then { vaccineType.value as value -> lmVaccinationStatus.VaccineType = value "set vaccine type"; } "set"; } "set"; } group mapClinical(source qrClinical, target lmClinical : SOTMeaslesClinical) { qrClinical.item as item then { item.answer first as fever where item.linkId = 'fever' then { fever.value as value -> lmClinical.Fever = value "set Fever"; } "set"; item.answer first as temperature where item.linkId = 'temperature' then { temperature.value as value -> lmClinical.Temperature as temp, temp.value = value "set Temperature"; } "set"; item.answer first as dateOfFeverOnset where item.linkId = 'dateOfFeverOnset' then { dateOfFeverOnset.value as value -> lmClinical.FeverOnsetDate = value "set Date of Fever Onset"; } "set"; item.answer first as rash where item.linkId = 'rash' then { rash.value as value -> lmClinical.Rash = value "set Rash"; } "set"; item.answer first as rashType where item.linkId = 'rashType' then { rashType.value as value -> lmClinical.TypeOfRash = value "set Rash Type"; } "set"; item.answer first as rashDuration where item.linkId = 'rashDuration' then { rashDuration.value as value -> lmClinical.DurationOfRash = value "set Rash Duration"; } "set"; item.answer first as rashOnsetDate where item.linkId = 'rashOnsetDate' then { rashOnsetDate.value as value -> lmClinical.RashOnsetDate = value "set Rash Onset Date"; } "set"; item.answer first as cough where item.linkId = 'cough' then { cough.value as value -> lmClinical.Cough = value "set Cough"; } "set"; item.answer first as conjunctivitis where item.linkId = 'conjunctivitis' then { conjunctivitis.value as value -> lmClinical.Conjunctivitis = value "set Conjunctivitis"; } "set"; item.answer first as coryza where item.linkId = 'coryza' then { coryza.value as value -> lmClinical.Coryza = value "set Coryza"; } "set"; item.answer first as koplikSpots where item.linkId = 'koplikSpots' then { koplikSpots.value as value -> lmClinical.KoplikSpots = value "set Koplik Spots"; } "set"; item.answer first as lymphadenopathy where item.linkId = 'lymphadenopathy' then { lymphadenopathy.value as value -> lmClinical.Lymphadenopathy = value "set Lymphadenopathy"; } "set"; item.answer first as jointPain where item.linkId = 'jointPain' then { jointPain.value as value -> lmClinical.JointPain = value "set Arthralgia"; } "set"; item.answer first as pregnancy where item.linkId = 'pregnancy' then { pregnancy.value as value -> lmClinical.PregnancyStatus = value "set Pregnant"; } "set"; item.answer first as monthsPregnant where item.linkId = 'monthsPregnant' then { monthsPregnant.value as value -> lmClinical.GestationWeeks as weeks, weeks.value = value "set Pregnancy Weeks"; } "set"; item.answer first as placeOfBirth where item.linkId = 'placeOfBirth' then { placeOfBirth.value as value -> lmClinical.IntentedBirthPlacce = value "set Place of Birth"; } "set"; item.answer first as admitted where item.linkId = 'admitted' then { admitted.value as value -> lmClinical.HistoryOfHospitalization = value "set Hospitalized"; } "set"; item.answer first as admittedHCFName where item.linkId = 'admittedHCFName' then { admittedHCFName.value as value -> lmClinical.HospitalName = value "set Hospital Name"; } "set"; item.answer first as admissionDate where item.linkId = 'admissionDate' then { admissionDate.value as value -> lmClinical.DateOfAdmission = value "set Admission Date"; } "set"; item.answer first as hospitalRecordNumber where item.linkId = 'hospitalRecordNumber' then { hospitalRecordNumber.value as value -> lmClinical.HospitalRecordNumber = value "set Hospital Record Number"; } "set"; item.answer first as outcome where item.linkId = 'outcome' then { outcome.value as value -> lmClinical.Outcome = value "set Outcome"; } "set"; item.answer first as deathCause where item.linkId = 'primaryCauseOfDeath' then { deathCause.value as value -> lmClinical.primaryCauseOfDeath = value "set cause"; } "set"; item.answer first as outcomeDate where item.linkId = 'outcomeDate' then { outcomeDate.value as value -> lmClinical.DateOfDeath = value "set death date"; } "set"; item.answer first as diseaseAdditionalInfo where item.linkId = 'diseaseAdditionalInfo' then { diseaseAdditionalInfo.value as value -> lmClinical.Comments = value "set Comments"; } "set"; } "set clinical"; } group mapLaboratoryResults(source qrLaboratoryResults, target lmLaboratoryResults : LaboratoryResultsLogicalModel) { qrLaboratoryResults.item as item then { item.answer first as answer where item.linkId = 'specimenNumber' then { answer.value as value -> lmLaboratoryResults.SpecimenNumber = value "set SpecimenNumber"; } "set"; item.answer first as answer where item.linkId = 'sampleType' then { answer.value as value -> lmLaboratoryResults.SampleType = value "set SampleType"; } "set"; item.answer first as answer where item.linkId = 'collectionDate' then { answer.value as value -> lmLaboratoryResults.SpecimenCollectionDate = value "set SpecimenCollectionDate"; } "set"; item.answer first as answer where item.linkId = 'labName' then { answer.value as value -> lmLaboratoryResults.LabName = value "set Shipment Date"; } "set"; item.answer first as answer where item.linkId = 'specimenSentDate' then { answer.value as value -> lmLaboratoryResults.SpecimenSentDate = value "set SpecimenSentDate"; } "set"; item.answer first as answer where item.linkId = 'specimenReceivedDate' then { answer.value as value -> lmLaboratoryResults.SpecimenRecdDate = value "set SpecimenRecdDate"; } "set"; item.answer first as answer where item.linkId = 'sampleId' then { answer.value as value -> lmLaboratoryResults.SampleId = value "set SampleId"; } "set"; item.answer first as answer where item.linkId = 'testPerformed' then { answer.value as value -> lmLaboratoryResults.TypeOfTest = value "set TypeOfTest"; } "set"; item.answer first as answer where item.linkId = 'antigen' then { answer.value as value -> lmLaboratoryResults.Antigen = value "set Antigen"; } "set"; item.answer first as answer where item.linkId = 'result' then { answer.value as value -> lmLaboratoryResults.Results = value "set Results"; } "set"; item.answer first as answer where item.linkId = 'resultDate' then { answer.value as value -> lmLaboratoryResults.LabResultsDate = value "set LabResultsDate "; } "set"; item.answer first as answer where item.linkId = 'specifyVirus' then { answer.value as value -> lmLaboratoryResults.ViralGenotype = value "set specify virus"; } "set"; } "set labs"; } group mapTravelDetails(source qrTravelDetails, target lmContactTracing : SOTMeaslesContactTracing) { qrTravelDetails.answer first as answer where item.linkId = 'placeOfTravel' then { answer.value as value -> lmTravelDetails.placeOfTravel = value "set specify virus"; } "set"; qrTravelDetails.answer first as answer where item.linkId = 'arrivalDate' then { answer.value as value -> lmTravelDetails.arrivalDate = value "set specify virus"; } "set"; qrTravelDetails.answer first as answer where item.linkId = 'departureDate' then { answer.value as value -> lmTravelDetails.departureDate = value "set specify virus"; } "set"; } group mapContactTracing(source qrContactTracing, target lmContactTracing : SOTMeaslesContactTracing) { qrContactTracing.item as item then { item.answer first as answer where item.linkId = 'caseSearchConducted' then { answer.value as value -> lmContactTracing.caseSearchConducted = value "set specify virus"; } "set"; item.answer first as answer where item.linkId = 'noOfsuspectCases' then { answer.value as value -> lmContactTracing.noOfsuspectCases = value "set specify virus"; } "set"; item.answer first as answer where item.linkId = 'pregnantContact' then { answer.value as value -> lmContactTracing.pregnantContact = value "set specify virus"; } "set"; item.answer first as answer where item.linkId = 'pregnantContactNames' then { answer.value as value -> lmContactTracing.pregnantContactNames = value "set specify virus"; } "set"; item.answer first as answer where item.linkId = 'localCasesPresent' then { answer.value as value -> lmContactTracing.localCasesPresent = value "set specify virus"; } "set"; item.answer first as answer where item.linkId = 'travelledOutside' then { answer.value as value -> lmContactTracing.travelledOutside = value "set specify virus"; } "set"; item.answer first as qrTravelDetails where item.linkId = 'travelDetails' -> create('http://worldhealthorganization.github.io/smart-ot/StructureDefinition/SOTT1ExposureTravelHistory') as tgtTravelDetails then { qrTravelDetails -> qrTravelDetails then mapTravelDetails(qrTravelDetails, tgtTravelDetails) "d"; qrTravelDetails -> lmContactTracing.travelDetails = tgtTravelDetails "set"; } "set"; item.answer first as answer where item.linkId = 'infectionSetting' then { answer.value as value -> lmContactTracing.infectionSetting = value "set specify virus"; } "set"; item.answer first as answer where item.linkId = 'specifyInfectionSetting' then { answer.value as value -> lmContactTracing.specifyInfectionSetting = value "set specify virus"; } "set"; } "set contact tracing"; } group mapEpiData(source qrEpiData, target lmEpiData : EpiDataLogicalModel) { qrEpiData.item as item then { item.answer first as answer where item.linkId = 'ringVaccination' then { answer.value as value -> lmEpiData.ringVaccination = value "set finalClassification"; } "set"; item.answer first as answer where item.linkId = 'dateStarted' then { answer.value as value -> lmEpiData.dateStarted = value "set finalClassification"; } "set"; item.answer first as answer where item.linkId = 'dateEnded' then { answer.value as value -> lmEpiData.dateEnded = value "set finalClassification"; } "set"; item.answer first as answer where item.linkId = 'noOfDosesRingVaccination' then { answer.value as value -> lmEpiData.noOfDosesRingVaccination = value "set finalClassification"; } "set"; item.answer first as answer where item.linkId = 'rapidCoverageMonitioring' then { answer.value as value -> lmEpiData.rapidCoverageMonitioring = value "set finalClassification"; } "set"; item.answer first as answer where item.linkId = 'percentVaccinated' then { answer.value as value -> lmEpiData.percentVaccinated = value "set finalClassification"; } "set"; item.answer first as answer where item.linkId = 'contactTracingDone' then { answer.value as value -> lmEpiData.contactTracingDone = value "set finalClassification"; } "set"; item.answer first as answer where item.linkId = 'lastFollowUp' then { answer.value as value -> lmEpiData.lastFollowUp = value "set finalClassification"; } "set"; } "set epi data"; } group mapClassification(source qrClassification, target lmClassification : ClassificationLogicalModel) { qrClassification.item as item then { item.answer first as answer where item.linkId = 'finalClassification' then { answer.value as value -> lmClassification.FinalClassification = value "set finalClassification"; } "set"; item.answer first as answer where item.linkId = 'confirmationBasis' then { answer.value as value -> lmClassification.ConfirmationBasis = value "set confirmationBasis"; } "set"; item.answer first as answer where item.linkId = 'source' then { answer.value as value -> lmClassification.Source = value "set source"; } "set"; item.answer first as answer where item.linkId = 'countryImportation' then { answer.value as value -> lmClassification.CountryImportation = value "set countryImportation"; } "set"; item.answer first as answer where item.linkId = 'discardingBasis' then { answer.value as value -> lmClassification.DiscardingBasis = value "set discardingBasis"; } "set"; item.answer first as answer where item.linkId = 'contact' then { answer.value as value -> lmClassification.Contact = value "set contact"; } "set"; item.answer first as answer where item.linkId = 'contactCaseNo' then { answer.value as value -> lmClassification.ContactCaseNo = value "set contactCaseNo"; } "set"; item.answer first as answer where item.linkId = 'classifiedBy' then { answer.value as value -> lmClassification.ClassifiedBy = value "set classifiedBy"; } "set"; item.answer first as answer where item.linkId = 'classificationDate' then { answer.value as value -> lmClassification.ClassificationDate = value "set classificationDate"; } "set"; } "set classification"; }
linkId.value in ('reportingInstitution')
item.linkId = 'noOfDosesRingVaccination'
item.linkId = 'rapidCoverageMonitioring'