Name Flags Card. Type Description & Constraints SOTT1Laboratory 0..* BackboneElement This is an abstract type. Elements defined in Ancestors: @id, <a href="http://hl7.org/fhir/R4/datatypes.html#Element" title="May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.">extension, <a href="http://hl7.org/fhir/R4/datatypes.html#BackboneElement" title="May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).">modifierExtension Surveillance & Outbreak Toolkit T1 - Laboratory Instances of this logical model are not marked to be the target of a Reference laboratoryId 0..1 string Laboratory ID: labName 0..1 string Name of testing laboratory: labLocation 0..1 string Location of testing laboratory antibioticReceived 0..1 code Did the patient received antibiotic prior to specimen collection? Binding: SOT Yes No (required) labTests 0..* BackboneElement Details of tests performed sampleId 0..1 string Sample ID sampleType 0..1 string Type of specimen (blood, stool, CSF, skin smear…..) collectionDate 0..1 date Collection date testPerformedDate 0..1 date Date of test performed testPerformed 0..1 string Test performed result 0..1 code Result Binding: Results (required) proteinuria 0..1 code Proteinuria Binding: Yes No Unknown (required) hematuria 0..1 code Hematuria Binding: Yes No Unknown (required) haemoglobin 0..1 Quantity Haemoglobin (g/l) WBC 0..1 Quantity WBC count platelet 0..1 Quantity Platelets CRP 0..1 Quantity CRP: potassium 0..1 Quantity Potassium ALT 0..1 Quantity ALT/SGPT AST 0..1 Quantity AST/SGOT lactate 0..1 Quantity Lactate totalBilirubin 0..1 Quantity Total bilirubin creatinine 0..1 Quantity Creatinine urea 0..1 Quantity Urea kinase 0..1 Quantity Creatine kinase otherBloodTest 0..1 Quantity Other blood test: bloodGas 0..1 code Blood gasses analysis Binding: SOT Yes No (required) arterialBloodPH 0..1 string Arterial blood PH bicarbonates 0..1 string Bicarbonates PO2 0..1 string Partial pressure of oxygen PCO2 0..1 string Partial pressure of carbon dioxide O2SAT 0..1 string Oxygen saturation otherTestsPerformed 0..1 string Other tests performed and results (even negative results) labConclusion 0..1 string Laboratory conclusion environmentSampleTaken 0..1 code Environmental samples taken Binding: SOT Yes No (required) environmentSampleDetails 0..1 BackboneElement Details of environment sample environmentSample 0..1 string Products collectionDate 0..1 date Date of collection animalSampleTaken 0..1 code Animal samples taken Binding: SOT Yes No (required) animalSampleDetails 0..1 BackboneElement Details of animal sample animalSample 0..1 string Products collectionDate 0..1 date Date of collection Documentation for this format
Surveillance & Outbreak Toolkit T1 - Laboratory
Base definition for all elements that are defined inside a resource - but not those in a data type.
All FHIR elements must have a @value or children
hasValue() or (children().count() > id.count())
Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
Extensions are always sliced by (at least) url
Additional content defined by implementations
May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
Must have either extensions or value[x], not both
exists(f:extension)!=exists(f:*[starts-with(local-name(.), "value")])
Extensions that cannot be ignored even if unrecognized
May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).
Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).
Modifier extensions are expected to modify the meaning or interpretation of the element that contains them
Laboratory identification assigned to the case.
Did the patient received antibiotic prior to specimen collection?
Type of specimen (blood, stool, CSF, skin smear…..)
Record laboratory test results: Proteinuria
Record laboratory test results: Hematuria
Record laboratory test results: Haemoglobin (g/l)
Record laboratory test results: WBC count
Record laboratory test results: Platelets
Record laboratory test results: Potassium
Record laboratory test results: ALT/SGPT
Record laboratory test results: AST/SGOT
Record laboratory test results: Total bilirubin
Record laboratory test results: Creatinine
Record laboratory test results: Creatine kinase
Describe additional blood tests and give the results
Record laboratory test results: Blood gasses analysis
Record laboratory test results: Arterial blood PH
Record laboratory test results: Bicarbonates
Record laboratory test results: Partial pressure of oxygen
Record laboratory test results: Partial pressure of carbon dioxide
Record laboratory test results: Oxygen saturation
Other tests performed and results (even negative results)
Evaluate the laboratory test results and draw a conclusion from these results
Where any environmental samples taken and submitted to a laboratory
Describe the environmental samples (soil, water, air, etc)
When where these environmental samples taken
Where any animal samples taken and submitted to the laboratory (blood, oropharyngeal swabs, tissue, brain, feaces, etc)
What kind of animal samples were taken (blood, oropharyngeal swabs, tissue, brain, feaces, etc)