Generated Narrative: StructureMap IMMZ.Helpers map "http://smart.who.int/immunizations/StructureMap/IMMZ.Helpers" = "IMMZ.Helpers" // Immunization - Transform QuestionnaireResponse to Logical Model Helper groups uses "http://hl7.org/fhir/StructureDefinition/QuestionnaireResponse" alias QResp as source uses "http://hl7.org/fhir/StructureDefinition/Bundle" alias Bundle as target group ItemToValue(source item, target field) { item.answer first as answer then { answer.value as content -> field.value = content "SetValue"; } "FirstAnswer"; } group ItemToCode(source item, target field) { item.answer first as answer then { answer.value as coding then { coding.code as content -> field.value = content "SetCode"; } "Coding"; } "FirstAnswer"; } group ItemToCoding(source item, target field) { item.answer first as answer then { answer.value as coding then { coding.code as code -> field.code = code "SetCode"; coding.system as system -> field.system = system "SetSystem"; coding.display as display -> field.display = display "SetDisplay"; } "Coding"; } "FirstAnswer"; } group D1andD13Questions(source qr : QResp, target immz) { qr.item as item where item.linkId = 'birthDose' -> immz.birthDose as field then ItemToValue(item, field) "birthDose"; qr.item as item where item.linkId = 'typeOfDose' -> immz.typeOfDose as field then ItemToCoding(item, field) "typeOfDose"; qr.item as item where item.linkId = 'completedThePrimaryVaccinationSeries' -> immz.completedThePrimaryVaccinationSeries as field then ItemToValue(item, field) "completedThePrimaryVaccinationSeries"; qr.item as item where item.linkId = 'completedTheBoosterSeries' -> immz.completedTheBoosterSeries as field then ItemToValue(item, field) "completedTheBoosterSeries"; qr.item as item where item.linkId = 'dateWhenPrimaryVaccinationSeriesWasCompleted' -> immz.dateWhenPrimaryVaccinationSeriesWasCompleted as field then ItemToValue(item, field) "dateWhenPrimaryVaccinationSeriesWasCompleted"; qr.item as item where item.linkId = 'hivStatus' -> immz.hivStatus as field then ItemToCoding(item, field) "hivStatus"; qr.item as item where item.linkId = 'typeOfPoliovirusDose' -> immz.typeOfPoliovirusDose as field then ItemToCoding(item, field) "typeOfPoliovirusDose"; qr.item as item where item.linkId = 'typeOfJeDose' -> immz.typeOfJeDose as field then ItemToCoding(item, field) "typeOfJeDose"; qr.item as item where item.linkId = 'typeOfTbeDose' -> immz.typeOfTbeDose as field then ItemToCoding(item, field) "typeOfTbeDose"; qr.item as item where item.linkId = 'typeOfTyphoidDose' -> immz.typeOfTyphoidDose as field then ItemToCoding(item, field) "typeOfTyphoidDose"; qr.item as item where item.linkId = 'typeOfCholeraDose' -> immz.typeOfCholeraDose as field then ItemToCoding(item, field) "typeOfCholeraDose"; qr.item as item where item.linkId = 'typeOfMeningococcalDose' -> immz.typeOfMeningococcalDose as field then ItemToCoding(item, field) "typeOfMeningococcalDose"; qr.item as item where item.linkId = 'typeOfHepatitisADose' -> immz.typeOfHepatitisADose as field then ItemToCoding(item, field) "typeOfHepatitisADose"; qr.item as item where item.linkId = 'typeOfHepatitisBDose' -> immz.typeOfHepatitisBDose as field then ItemToCoding(item, field) "typeOfHepatitisBDose"; qr.item as item where item.linkId = 'vaccineType' -> immz.vaccineType as field then ItemToCoding(item, field) "vaccineType"; qr.item as item where item.linkId = 'dateAndTimeOfVaccination' -> immz.dateAndTimeOfVaccination as field then ItemToValue(item, field) "dateAndTimeOfVaccination"; qr.item as item where item.linkId = 'contactDate' -> immz.contactDate as field then ItemToValue(item, field) "contactDate"; qr.item as item where item.linkId = 'ancContactNumber' -> immz.ancContactNumber as field then ItemToValue(item, field) "ancContactNumber"; qr.item as item where item.linkId = 'doseNumber' -> immz.doseNumber as field then ItemToValue(item, field) "doseNumber"; } group D1Questions(source qr : QResp, target immz) { qr.item as item where item.linkId = 'pretermBirth' -> immz.pretermBirth as field then ItemToValue(item, field) "pretermBirth"; qr.item as item where item.linkId = 'immunocompromised' -> immz.immunocompromised as field then ItemToValue(item, field) "immunocompromised"; qr.item as item where item.linkId = 'currentlyOnArt' -> immz.currentlyOnArt as field then ItemToValue(item, field) "currentlyOnArt"; qr.item as item where item.linkId = 'currentlyOnArt' -> immz.currentlyOnArt as field then ItemToValue(item, field) "currentlyOnArt"; qr.item as item where item.linkId = 'typeOfTbInfectionTestPerformed' -> immz.typeOfTbInfectionTestPerformed as field then ItemToCoding(item, field) "typeOfTbInfectionTestPerformed"; qr.item as item where item.linkId = 'tbInfectionTestResult' -> immz.tbInfectionTestResult as field then ItemToCoding(item, field) "tbInfectionTestResult"; qr.item as item where item.linkId = 'immunologicallyStable' -> immz.immunologicallyStable as field then ItemToValue(item, field) "immunologicallyStable"; qr.item as item where item.linkId = 'clinicallyWell' -> immz.clinicallyWell as field then ItemToValue(item, field) "clinicallyWell"; qr.item as item where item.linkId = 'birthWeightInGrams' -> immz.birthWeightInGrams as field then ItemToValue(item, field) "birthWeightInGrams"; qr.item as item where item.linkId = 'artStartDate' -> immz.artStartDate as field then ItemToValue(item, field) "artStartDate"; qr.item as item where item.linkId = 'highRiskOfPneumococcalInfection' -> immz.highRiskOfPneumococcalInfection as field then ItemToValue(item, field) "highRiskOfPneumococcalInfection"; qr.item as item where item.linkId = 'ageInMonthsWhenClientReceivedFirstMeningococcalDose' -> immz.ageInMonthsWhenClientReceivedFirstMeningococcalDose as field then ItemToValue(item, field) "ageInMonthsWhenClientReceivedFirstMeningococcalDose"; qr.item as item where item.linkId = 'vnaLevel' -> immz.vnaLevel as field then ItemToValue(item, field) "vnaLevel"; qr.item as item where item.linkId = 'riskOfOccupationalExposureToRabiesVirus' -> immz.riskOfOccupationalExposureToRabiesVirus as field then ItemToValue(item, field) "riskOfOccupationalExposureToRabiesVirus"; qr.item as item where item.linkId = 'dengueSerostatus' -> immz.dengueSerostatus as field then ItemToCoding(item, field) "dengueSerostatus"; } group D13Questions(source qr : QResp, target immz) { qr.item as item where item.linkId = 'immunizationEventStatus' -> immz.immunizationEventStatus as field then ItemToCoding(item, field) "immunizationEventStatus"; qr.item as item where item.linkId = 'reasonVaccineWasNotAdministered' -> immz.reasonVaccineWasNotAdministered as field then ItemToCoding(item, field) "reasonVaccineWasNotAdministered"; qr.item as item where item.linkId = 'vaccineBrand' -> immz.vaccineBrand as field then ItemToCoding(item, field) "vaccineBrand"; qr.item as item where item.linkId = 'liveVaccine' -> immz.liveVaccine as field then ItemToValue(item, field) "liveVaccine"; qr.item as item where item.linkId = 'countryOfVaccination' -> immz.countryOfVaccination as field then ItemToCoding(item, field) "countryOfVaccination"; qr.item as item where item.linkId = 'administrativeArea' -> immz.administrativeArea as field then ItemToCoding(item, field) "administrativeArea"; qr.item as item where item.linkId = 'vaccineManufacturer' -> immz.vaccineManufacturer as field then ItemToCoding(item, field) "vaccineManufacturer"; qr.item as item where item.linkId = 'vaccineBatchNumber' -> immz.vaccineBatchNumber as field then ItemToValue(item, field) "vaccineBatchNumber"; qr.item as item where item.linkId = 'vaccineMarketAuthorizationHolder' -> immz.vaccineMarketAuthorizationHolder as field then ItemToCoding(item, field) "vaccineMarketAuthorizationHolder"; qr.item as item where item.linkId = 'expirationDate' -> immz.expirationDate as field then ItemToValue(item, field) "expirationDate"; qr.item as item where item.linkId = 'doseQuantity' -> immz.doseQuantity as field then ItemToValue(item, field) "doseQuantity"; qr.item as item where item.linkId = 'healthWorkerIdentifier' -> immz.healthWorkerIdentifier as field then ItemToValue(item, field) "healthWorkerIdentifier"; qr.item as item where item.linkId = 'totalDosesInSeries' -> immz.totalDosesInSeries as field then ItemToValue(item, field) "totalDosesInSeries"; qr.item as item where item.linkId = 'diseaseTargeted' -> immz.diseaseTargeted as field then ItemToCoding(item, field) "diseaseTargeted"; qr.item as item where item.linkId = 'dueDateOfNextDose' -> immz.dueDateOfNextDose as field then ItemToValue(item, field) "dueDateOfNextDose"; } group MakeImmzObservation(source patient : Reference, source immid, source code : Coding, source cat : Coding, source value, target bundle : Bundle) { value -> uuid() as oid, bundle.entry as entry, entry.fullUrl = append('urn:uuid:', oid), entry.request as request, request.method = 'PUT', request.url = append('Observation/', oid), entry.resource = create('Observation') as obs then { value -> obs.id = oid "SetId"; immid -> obs.partOf as partOf, partOf.reference = append('urn:uuid:', immid) "SetPartOf"; patient -> obs.subject = patient "SetSubject"; code -> obs.code = code "SetCode"; value -> obs.value = value "SetValue"; cat -> obs.category = cat "SetCategory"; } "CreateObservation"; } group MakeObservation(source patient : Reference, source code : Coding, source cat : Coding, source value, target bundle : Bundle) { value -> uuid() as oid, bundle.entry as entry, entry.fullUrl = append('urn:uuid:', oid), entry.request as request, request.method = 'PUT', request.url = append('Observation/', oid), entry.resource = create('Observation') as obs then { value -> obs.id = oid "SetId"; patient -> obs.subject = patient "SetSubject"; code -> obs.code = code "SetCode"; value -> obs.value = value "SetValue"; cat -> obs.category = cat "SetCategory"; } "CreateObservation"; } group TypeOfVaccineDose(source typeof : Coding, target ext : Extension) { typeof -> ext.url = 'http://smart.who.int/immunizations/StructureDefinition/IMMZTypeOfDose' "SetURL"; typeof -> ext.value = typeof "SetValue"; } group MakeImmunization(source patient : Reference, source immid, source immz, target bundle : Bundle) { immz.vaccineType as vaccineCode -> bundle.entry as entry, entry.fullUrl = append('urn:uuid:', immid), entry.request as request, request.method = 'PUT', request.url = append('Immunization/', immid), entry.resource = create('Immunization') as imm then { // D1 and D13 immid -> imm.id = immid "SetId"; patient -> imm.patient = patient "SetPatient"; vaccineCode -> imm.vaccineCode = vaccineCode "vaccineCode"; immz.typeOfDose as typeOfDose -> imm.protocolApplied as pa then { typeOfDose.code as code -> pa.series = code "SetSeriesToCode"; // if display is missing typeOfDose.display as display -> pa.series = display "SetSeriesToDisplay"; immz.doseNumber as doseNumber -> pa.doseNumber = doseNumber "SetDoseNumber"; immz.totalDosesInSeries as totalDoses -> pa.seriesDoses = totalDoses; immz.diseaseTargeted as disease -> pa.targetDisease = disease; immz.dueDateOfNextDose as duedate -> pa.extension as ext, ext.url = 'http://smart.who.int/immunizations/StructureDefinition/IMMZDueDateOfNextDose', ext.value = duedate; } "protocolApplied"; immz.dateAndTimeOfVaccination as occurrence -> imm.occurrence = occurrence; immz.typeOfPoliovirusDose as typeof -> imm.extension as ext then TypeOfVaccineDose(typeof, ext); immz.typeOfJeDose as typeof -> imm.extension as ext then TypeOfVaccineDose(typeof, ext); immz.typeOfTbeDose as typeof -> imm.extension as ext then TypeOfVaccineDose(typeof, ext); immz.typeOfTyphoidDose as typeof -> imm.extension as ext then TypeOfVaccineDose(typeof, ext); immz.typeOfCholeraDose as typeof -> imm.extension as ext then TypeOfVaccineDose(typeof, ext); immz.typeOfMeningococcalDose as typeof -> imm.extension as ext then TypeOfVaccineDose(typeof, ext); immz.typeOfHepatitisADose as typeof -> imm.extension as ext then TypeOfVaccineDose(typeof, ext); immz.typeOfHepatitisBDose as typeof -> imm.extension as ext then TypeOfVaccineDose(typeof, ext); // D1 immz -> imm.status = 'completed' "SetDefaultStatus"; // D13 immz.immunizationEventStatus as status -> imm.status = translate(status, 'http://smart.who.int/immunizations/ConceptMap/IMMZ.D.ConceptMap', 'code'); immz.reasonVaccineWasNotAdministered as reason -> imm.statusReason = reason; immz.vaccineBrand as brand -> imm.extension as ext, ext.url = 'http://smart.who.int/immunizations/StructureDefinition/IMMZVaccineBrand', ext.value = brand; immz.liveVaccine as live -> imm.extension as ext, ext.url = 'http://smart.who.int/immunizations/StructureDefinition/IMMZLiveVaccine', ext.value = live; immz.countryOfVaccination as country -> imm.extension as ext, ext.url = 'http://smart.who.int/immunizations/StructureDefinition/IMMZCountryOfVaccination', ext.value = country; immz.administrativeArea as area -> imm.extension as ext, ext.url = 'http://smart.who.int/immunizations/StructureDefinition/IMMZAdministrativeArea', ext.value = area; immz.vaccineManufacturer as vman -> imm.manufacturer as manufacturer, manufacturer.identifier as identifier then { vman.system as system -> identifier.system = system "SetSystem"; vman.code as code -> identifier.value = code "SetValue"; }; immz.vaccineBatchNumber as batch -> imm.lotNumber = batch; immz.vaccineMarketAuthorizationHolder as market -> imm.extension as ext, ext.url = 'http://smart.who.int/immunizations/StructureDefinition/IMMZMarketAuthorization', ext.value = market; immz.expirationDate as expiration -> imm.expirationDate = expiration; immz.doseQuantity as dosequantity -> imm.doseQuantity = dosequantity; immz.healthWorkerIdentifier as hw -> imm.performer as performer, performer.actor as actor, actor.identifier as identifier, identifier.value = hw; } "MakeImmunization"; } group D1andD13Observations(source patient : Reference, source immid, source immz, target bundle : Bundle) { immz -> c('http://terminology.hl7.org/CodeSystem/observation-category', 'survey', 'Survey') as survey then { immz.birthDose as content -> c('http://smart.who.int/immunizations/CodeSystem/IMMZ.D', 'DE263', 'Birth dose') as code then MakeImmzObservation(patient, immid, code, survey, content, bundle); immz.completedThePrimaryVaccinationSeries as content -> c('http://smart.who.int/immunizations/CodeSystem/IMMZ.D', 'DE203', 'Completed the primary vaccination series') as code then MakeImmzObservation(patient, immid, code, survey, content, bundle); immz.completedTheBoosterSeries as content -> c('http://smart.who.int/immunizations/CodeSystem/IMMZ.D', 'DE257', 'Completed the booster series') as code then MakeImmzObservation(patient, immid, code, survey, content, bundle); immz.dateWhenPrimaryVaccinationSeriesWasCompleted as content -> c('http://smart.who.int/immunizations/CodeSystem/IMMZ.D', 'DE242', 'Date when primary vaccination series was completed') as code then MakeImmzObservation(patient, immid, code, survey, content, bundle); immz.hivStatus as content -> c('http://smart.who.int/immunizations/CodeSystem/IMMZ.D', 'DE204', 'HIV status') as code then MakeImmzObservation(patient, immid, code, survey, content, bundle); immz.contactDate as content -> c('http://smart.who.int/immunizations/CodeSystem/IMMZ.D', 'DE201', 'Contact date') as code then MakeImmzObservation(patient, immid, code, survey, content, bundle); immz.ancContactNumber as content -> c('http://smart.who.int/immunizations/CodeSystem/IMMZ.D', 'DE202', 'ANC contact number') as code then MakeImmzObservation(patient, immid, code, survey, content, bundle); } "DefineCategory"; } group D1Observations(source patient : Reference, source immid, source immz, target bundle : Bundle) { immz -> c('http://terminology.hl7.org/CodeSystem/observation-category', 'survey', 'Survey') as survey then { immz.pretermBirth as content -> c('http://smart.who.int/immunizations/CodeSystem/IMMZ.D', 'DE208', 'Preterm birth') as code then MakeImmzObservation(patient, immid, code, survey, content, bundle); immz.immunocompromised as content -> c('http://smart.who.int/immunizations/CodeSystem/IMMZ.D', 'DE209', 'Immunocompromised') as code then MakeImmzObservation(patient, immid, code, survey, content, bundle); immz.currentlyOnArt as content -> c('http://smart.who.int/immunizations/CodeSystem/IMMZ.D', 'DE210', 'Currently on ART') as code then MakeImmzObservation(patient, immid, code, survey, content, bundle); immz.typeOfTbInfectionTestPerformed as content -> c('http://smart.who.int/immunizations/CodeSystem/IMMZ.D', 'DE243', 'Type of TB infection test performed') as code then MakeImmzObservation(patient, immid, code, survey, content, bundle); immz.tbInfectionTestResult as content -> c('http://smart.who.int/immunizations/CodeSystem/IMMZ.D', 'DE246', 'TB infection test result') as code then MakeImmzObservation(patient, immid, code, survey, content, bundle); immz.immunologicallyStable as content -> c('http://smart.who.int/immunizations/CodeSystem/IMMZ.D', 'DE249', 'Immunologically stable') as code then MakeImmzObservation(patient, immid, code, survey, content, bundle); immz.clinicallyWell as content -> c('http://smart.who.int/immunizations/CodeSystem/IMMZ.D', 'DE250', 'Clinically well') as code then MakeImmzObservation(patient, immid, code, survey, content, bundle); immz.birthWeightInGrams as value -> create('Quantity') as content, content.system = 'http://unitsofmeasure.org', content.code = 'g', content.unit = 'g', content.value = value, c('http://loinc.org', '8339-4', 'Birth weight Measured') as bwloinc, c('http://smart.who.int/immunizations/CodeSystem/IMMZ.D', 'DE211', 'Birth weight in grams') as bwdak, create('CodeableConcept') as code, code.coding = bwloinc, code.coding = bwdak, c('http://terminology.hl7.org/CodeSystem/observation-category', 'vital-signs', 'Vital Signs') as vital then MakeImmzObservation(patient, immid, code, vital, content, bundle); immz.artStartDate as content -> c('http://smart.who.int/immunizations/CodeSystem/IMMZ.D', 'DE215', 'ART start date') as code then MakeImmzObservation(patient, immid, code, survey, content, bundle); immz.highRiskOfPneumococcalInfection as content -> c('http://smart.who.int/immunizations/CodeSystem/IMMZ.D', 'DE251', 'High risk of pneumococcal infection') as code then MakeImmzObservation(patient, immid, code, survey, content, bundle); immz.ageInMonthsWhenClientReceivedFirstMeningococcalDose as value -> create('Quantity') as content, content.unit = 'mo', content.value = value, c('http://smart.who.int/immunizations/CodeSystem/IMMZ.D', 'DE236', 'Age in months when client received first meningococcal dose') as code then MakeImmzObservation(patient, immid, code, survey, content, bundle); immz.vnaLevel as value -> create('Quantity') as content, content.system = 'http://unitsofmeasure.org', content.code = '[IU]/mL', content.unit = '[IU]/mL', content.value = value, c('http://smart.who.int/immunizations/CodeSystem/IMMZ.D', 'DE240', 'VNA level') as code then MakeImmzObservation(patient, immid, code, survey, content, bundle); immz.riskOfOccupationalExposureToRabiesVirus as content -> c('http://smart.who.int/immunizations/CodeSystem/IMMZ.D', 'DE253', 'Risk of occupational exposure to rabies virus') as code then MakeImmzObservation(patient, immid, code, survey, content, bundle); immz.dengueSerostatus as content -> c('http://smart.who.int/immunizations/CodeSystem/IMMZ.D', 'DE241', 'Dengue serostatus') as code then MakeImmzObservation(patient, immid, code, survey, content, bundle); } "DefineCategory"; }
Immunization - Transform QuestionnaireResponse to Logical Model Helper groups
item.linkId = 'completedThePrimaryVaccinationSeries'
item.linkId = 'completedTheBoosterSeries'
item.linkId = 'dateWhenPrimaryVaccinationSeriesWasCompleted'
item.linkId = 'dateAndTimeOfVaccination'
item.linkId = 'typeOfTbInfectionTestPerformed'
item.linkId = 'highRiskOfPneumococcalInfection'
item.linkId = 'ageInMonthsWhenClientReceivedFirstMeningococcalDose'
item.linkId = 'riskOfOccupationalExposureToRabiesVirus'
item.linkId = 'reasonVaccineWasNotAdministered'
item.linkId = 'vaccineMarketAuthorizationHolder'
Completed the primary vaccination series
Date when primary vaccination series was completed
Age in months when client received first meningococcal dose
Risk of occupational exposure to rabies virus