/**
 * @dataElement All Doses Administered to Patient
 */
define "Doses Administered to Patient":
  [Immunization] I
    where I.status = 'completed'
    and I.isSubpotent is not true

/*
@internal: Polio containing Doses Administered to Patient
*/
define "Polio Doses Administered to Patient":
  Elements."Doses Administered to Patient" I
  where
    I.vaccineCode in Concepts."Poliovirus-containing vaccines"

/*
@internal: Polio containing Doses Administered to Patient that are in the Primary series
*/
define "Polio Primary Series Doses Administered to Patient":
  "Polio Doses Administered to Patient".seriesPrimary()

/*
@internal: Polio bOPV Primary Series Doses Administered to Patient
*/
define "Polio bOPV Primary Series Doses Administered to Patient":
  "Polio Primary Series Doses Administered to Patient" I
  where I.typeOfDose() ~ Concepts."bOPV"

/*
@numerator: Number of OPV doses (3rd dose) administered through routine services during the reporting period
@pseudocode: COUNT of immunization events WHERE "Vaccine type" = "Oral polio vaccines" for the 3rd dose in the primary series AND "Date and time of vaccination" is during the reporting period
*/
define "Numerator":
  Coalesce( Polio."Polio bOPV Primary Series Doses Administered to Patient".sortedIndex(2).occurrence.toInterval() starts during "Measurement Period",
    false )

/*
@stratifier: Infant disaggregations by age
*/
define "Infant By Age Stratifier":
    case 
        when AgeInYearsAt(end of "Measurement Period") < 1 then Age."P0Y--P1Y"
        when AgeInYearsAt(end of "Measurement Period") >= 1 then Age."P1Y--P9999Y"
        else null
    end

define "Stratification 4":
	Elements."Infant By Age Stratifier"

/*
@stratifier: Age in Years
*/
define "Age Stratifier":
  case
    when AgeInYearsAt(end of "Measurement Period") < 1 then Age."P0Y--P1Y"
    when AgeInYearsAt(end of "Measurement Period") < 2 then Age."P1Y--P2Y"
    when AgeInYearsAt(end of "Measurement Period") < 3 then Age."P2Y--P3Y"
    when AgeInYearsAt(end of "Measurement Period") < 4 then Age."P3Y--P4Y"
    when AgeInYearsAt(end of "Measurement Period") < 5 then Age."P4Y--P5Y"
    when AgeInYearsAt(end of "Measurement Period") < 6 then Age."P5Y--P6Y"
    when AgeInYearsAt(end of "Measurement Period") < 7 then Age."P6Y--P7Y"
    when AgeInYearsAt(end of "Measurement Period") < 8 then Age."P7Y--P8Y"
    when AgeInYearsAt(end of "Measurement Period") < 9 then Age."P8Y--P9Y"
    when AgeInYearsAt(end of "Measurement Period") < 10 then Age."P9Y--P10Y"
    when AgeInYearsAt(end of "Measurement Period") < 11 then Age."P10Y--P11Y"
    when AgeInYearsAt(end of "Measurement Period") < 12 then Age."P11Y--P12Y"
    when AgeInYearsAt(end of "Measurement Period") < 13 then Age."P12Y--P13Y"
    when AgeInYearsAt(end of "Measurement Period") < 14 then Age."P13Y--P14Y"
    when AgeInYearsAt(end of "Measurement Period") < 15 then Age."P14Y--P15Y"
    when AgeInYearsAt(end of "Measurement Period") < 16 then Age."P15Y--P16Y"
    when AgeInYearsAt(end of "Measurement Period") < 17 then Age."P16Y--P17Y"
    when AgeInYearsAt(end of "Measurement Period") < 18 then Age."P17Y--P18Y"
    when AgeInYearsAt(end of "Measurement Period") < 19 then Age."P18Y--P19Y"
    when AgeInYearsAt(end of "Measurement Period") < 20 then Age."P19Y--P20Y"
    when AgeInYearsAt(end of "Measurement Period") < 21 then Age."P20Y--P21Y"
    when AgeInYearsAt(end of "Measurement Period") < 22 then Age."P21Y--P22Y"
    when AgeInYearsAt(end of "Measurement Period") < 23 then Age."P22Y--P23Y"
    when AgeInYearsAt(end of "Measurement Period") < 24 then Age."P23Y--P24Y"
    when AgeInYearsAt(end of "Measurement Period") < 25 then Age."P24Y--P25Y"
    when AgeInYearsAt(end of "Measurement Period") < 26 then Age."P25Y--P26Y"
    when AgeInYearsAt(end of "Measurement Period") < 27 then Age."P26Y--P27Y"
    when AgeInYearsAt(end of "Measurement Period") < 28 then Age."P27Y--P28Y"
    when AgeInYearsAt(end of "Measurement Period") < 29 then Age."P28Y--P29Y"
    when AgeInYearsAt(end of "Measurement Period") < 30 then Age."P29Y--P30Y"
    when AgeInYearsAt(end of "Measurement Period") < 31 then Age."P30Y--P31Y"
    when AgeInYearsAt(end of "Measurement Period") < 32 then Age."P31Y--P32Y"
    when AgeInYearsAt(end of "Measurement Period") < 33 then Age."P32Y--P33Y"
    when AgeInYearsAt(end of "Measurement Period") < 34 then Age."P33Y--P34Y"
    when AgeInYearsAt(end of "Measurement Period") < 35 then Age."P34Y--P35Y"
    when AgeInYearsAt(end of "Measurement Period") < 36 then Age."P35Y--P36Y"
    when AgeInYearsAt(end of "Measurement Period") < 37 then Age."P36Y--P37Y"
    when AgeInYearsAt(end of "Measurement Period") < 38 then Age."P37Y--P38Y"
    when AgeInYearsAt(end of "Measurement Period") < 39 then Age."P38Y--P39Y"
    when AgeInYearsAt(end of "Measurement Period") < 40 then Age."P39Y--P40Y"
    when AgeInYearsAt(end of "Measurement Period") < 41 then Age."P40Y--P41Y"
    when AgeInYearsAt(end of "Measurement Period") < 42 then Age."P41Y--P42Y"
    when AgeInYearsAt(end of "Measurement Period") < 43 then Age."P42Y--P43Y"
    when AgeInYearsAt(end of "Measurement Period") < 44 then Age."P43Y--P44Y"
    when AgeInYearsAt(end of "Measurement Period") < 45 then Age."P44Y--P45Y"
    when AgeInYearsAt(end of "Measurement Period") < 46 then Age."P45Y--P46Y"
    when AgeInYearsAt(end of "Measurement Period") < 47 then Age."P46Y--P47Y"
    when AgeInYearsAt(end of "Measurement Period") < 48 then Age."P47Y--P48Y"
    when AgeInYearsAt(end of "Measurement Period") < 49 then Age."P48Y--P49Y"
    when AgeInYearsAt(end of "Measurement Period") < 50 then Age."P49Y--P50Y"
    when AgeInYearsAt(end of "Measurement Period") < 51 then Age."P50Y--P51Y"
    when AgeInYearsAt(end of "Measurement Period") < 52 then Age."P51Y--P52Y"
    when AgeInYearsAt(end of "Measurement Period") < 53 then Age."P52Y--P53Y"
    when AgeInYearsAt(end of "Measurement Period") < 54 then Age."P53Y--P54Y"
    when AgeInYearsAt(end of "Measurement Period") < 55 then Age."P54Y--P55Y"
    when AgeInYearsAt(end of "Measurement Period") < 56 then Age."P55Y--P56Y"
    when AgeInYearsAt(end of "Measurement Period") < 57 then Age."P56Y--P57Y"
    when AgeInYearsAt(end of "Measurement Period") < 58 then Age."P57Y--P58Y"
    when AgeInYearsAt(end of "Measurement Period") < 59 then Age."P58Y--P59Y"
    when AgeInYearsAt(end of "Measurement Period") < 60 then Age."P59Y--P60Y"
    when AgeInYearsAt(end of "Measurement Period") < 61 then Age."P60Y--P61Y"
    when AgeInYearsAt(end of "Measurement Period") < 62 then Age."P61Y--P62Y"
    when AgeInYearsAt(end of "Measurement Period") < 63 then Age."P62Y--P63Y"
    when AgeInYearsAt(end of "Measurement Period") < 64 then Age."P63Y--P64Y"
    when AgeInYearsAt(end of "Measurement Period") < 65 then Age."P64Y--P65Y"
    when AgeInYearsAt(end of "Measurement Period") < 66 then Age."P65Y--P66Y"
    when AgeInYearsAt(end of "Measurement Period") < 67 then Age."P66Y--P67Y"
    when AgeInYearsAt(end of "Measurement Period") < 68 then Age."P67Y--P68Y"
    when AgeInYearsAt(end of "Measurement Period") < 69 then Age."P68Y--P69Y"
    when AgeInYearsAt(end of "Measurement Period") < 70 then Age."P69Y--P70Y"
    when AgeInYearsAt(end of "Measurement Period") < 71 then Age."P70Y--P71Y"
    when AgeInYearsAt(end of "Measurement Period") < 72 then Age."P71Y--P72Y"
    when AgeInYearsAt(end of "Measurement Period") < 73 then Age."P72Y--P73Y"
    when AgeInYearsAt(end of "Measurement Period") < 74 then Age."P73Y--P74Y"
    when AgeInYearsAt(end of "Measurement Period") < 75 then Age."P74Y--P75Y"
    when AgeInYearsAt(end of "Measurement Period") < 76 then Age."P75Y--P76Y"
    when AgeInYearsAt(end of "Measurement Period") < 77 then Age."P76Y--P77Y"
    when AgeInYearsAt(end of "Measurement Period") < 78 then Age."P77Y--P78Y"
    when AgeInYearsAt(end of "Measurement Period") < 79 then Age."P78Y--P79Y"
    when AgeInYearsAt(end of "Measurement Period") < 80 then Age."P79Y--P80Y"
    when AgeInYearsAt(end of "Measurement Period") < 81 then Age."P80Y--P81Y"
    when AgeInYearsAt(end of "Measurement Period") < 82 then Age."P81Y--P82Y"
    when AgeInYearsAt(end of "Measurement Period") < 83 then Age."P82Y--P83Y"
    when AgeInYearsAt(end of "Measurement Period") < 84 then Age."P83Y--P84Y"
    when AgeInYearsAt(end of "Measurement Period") < 85 then Age."P84Y--P85Y"
    when AgeInYearsAt(end of "Measurement Period") < 86 then Age."P85Y--P86Y"
    when AgeInYearsAt(end of "Measurement Period") < 87 then Age."P86Y--P87Y"
    when AgeInYearsAt(end of "Measurement Period") < 88 then Age."P87Y--P88Y"
    when AgeInYearsAt(end of "Measurement Period") < 89 then Age."P88Y--P89Y"
    when AgeInYearsAt(end of "Measurement Period") < 90 then Age."P89Y--P90Y"
    when AgeInYearsAt(end of "Measurement Period") < 91 then Age."P90Y--P91Y"
    when AgeInYearsAt(end of "Measurement Period") < 92 then Age."P91Y--P92Y"
    when AgeInYearsAt(end of "Measurement Period") < 93 then Age."P92Y--P93Y"
    when AgeInYearsAt(end of "Measurement Period") < 94 then Age."P93Y--P94Y"
    when AgeInYearsAt(end of "Measurement Period") < 95 then Age."P94Y--P95Y"
    when AgeInYearsAt(end of "Measurement Period") < 96 then Age."P95Y--P96Y"
    when AgeInYearsAt(end of "Measurement Period") < 97 then Age."P96Y--P97Y"
    when AgeInYearsAt(end of "Measurement Period") < 98 then Age."P97Y--P98Y"
    when AgeInYearsAt(end of "Measurement Period") < 99 then Age."P98Y--P99Y"
    when AgeInYearsAt(end of "Measurement Period") < 100 then Age."P99Y--P100Y"
    when AgeInYearsAt(end of "Measurement Period") >= 100 then Age."P100Y--P9999Y"
    else null
  end

define "Stratification 3":
	Elements."Age Stratifier"

/*
@stratifier: By Administrative Gender of Patient Stratifier
*/
define "By Administrative Gender Stratifier":
    case 
        when Patient.gender = 'male' then "Males"
        when Patient.gender = 'female' then "Females"
        else "Other"
    end

define "Stratification 2":
	Elements."By Administrative Gender Stratifier"

/*
@stratifier: By Geographic Region of Patient Stratifier
*/
define "By Geographic Region Stratifier":
    First(Patient.address A where A.use in { 'home' }).state

/*
@disaggregation: Administrative area
                 Sex
                 Age in years
                 Age group (depending on schedule)
*/
define "Stratification 1":
	Elements."By Geographic Region Stratifier"

/*
@denominator: Number in target group
@pseudocode: As defined by the Member States
*/
define "Denominator":
  true

/*
 * As defined by Member State
 */
define "Initial Population":
  true

/*
From FHIRCommon 4.1.0:
*/

/*
@description: Normalizes a value that is a choice of timing-valued types to an equivalent interval
@comment: Normalizes a choice type of FHIR.dateTime, FHIR.Period, FHIR.Timing, FHIR.instance, FHIR.string, FHIR.Age, or FHIR.Range types
to an equivalent interval. This selection of choice types is a superset of the majority of choice types that are used as possible
representations for timing-valued elements in FHIR, allowing this function to be used across any resource.

The input can be provided as a dateTime, Period, Timing, instant, string, Age, or Range.
The intent of this function is to provide a clear and concise mechanism to treat single
elements that have multiple possible representations as intervals so that logic doesn't have to account
for the variability. More complex calculations (such as medication request period or dispense period
calculation) need specific guidance and consideration. That guidance may make use of this function, but
the focus of this function is on single element calculations where the semantics are unambiguous.
If the input is a dateTime, the result a DateTime Interval beginning and ending on that dateTime.
If the input is a Period, the result is a DateTime Interval.
If the input is a Timing, an error is raised indicating a single interval cannot be computed from a Timing.
If the input is an instant, the result is a DateTime Interval beginning and ending on that instant.
If the input is a string, an error is raised indicating a single interval cannot be computed from a string.
If the input is an Age, the result is a DateTime Interval beginning when the patient was the given Age,
and ending immediately prior to when the patient was the given Age plus one year.
If the input is a Range, the result is a DateTime Interval beginning when the patient was the Age given
by the low end of the Range, and ending immediately prior to when the patient was the Age given by the
high end of the Range plus one year.

NOTE: Due to the
complexity of determining a single interval from a Timing or String type, this function will throw a run-time exception if it is used
with a Timing or String.
*/
define fluent function toInterval(choice Choice<FHIR.dateTime, FHIR.Period, FHIR.Timing, FHIR.instant, FHIR.string, FHIR.Age, FHIR.Range>):
  case
    when choice is FHIR.dateTime then
      Interval[FHIRHelpers.ToDateTime(choice as FHIR.dateTime), FHIRHelpers.ToDateTime(choice as FHIR.dateTime)]
    when choice is FHIR.Period then
      FHIRHelpers.ToInterval(choice as FHIR.Period)
    when choice is FHIR.instant then
      Interval[FHIRHelpers.ToDateTime(choice as FHIR.instant), FHIRHelpers.ToDateTime(choice as FHIR.instant)]
    when choice is FHIR.Age then
      Interval[FHIRHelpers.ToDate(Patient.birthDate) + FHIRHelpers.ToQuantity(choice as FHIR.Age),
        FHIRHelpers.ToDate(Patient.birthDate) + FHIRHelpers.ToQuantity(choice as FHIR.Age) + 1 year)
    when choice is FHIR.Range then
      Interval[FHIRHelpers.ToDate(Patient.birthDate) + FHIRHelpers.ToQuantity((choice as FHIR.Range).low),
        FHIRHelpers.ToDate(Patient.birthDate) + FHIRHelpers.ToQuantity((choice as FHIR.Range).high) + 1 year)
    when choice is FHIR.Timing then
      Message(null as Interval<DateTime>, true, 'NOT_IMPLEMENTED', 'Error', 'Calculation of an interval from a Timing value is not supported')
    when choice is FHIR.string then
      Message(null as Interval<DateTime>, true, 'NOT_IMPLEMENTED', 'Error', 'Calculation of an interval from a String value is not supported')
    else
      null as Interval<DateTime>
  end

define function ToDateTime(value dateTime): value.value

define function ToInterval(period FHIR.Period):
    if period is null then
        null
    else
        if period."start" is null then
            Interval(period."start".value, period."end".value]
        else
            Interval[period."start".value, period."end".value]

define function ToDateTime(value instant): value.value

define function ToDate(value date): value.value

define function ToQuantity(quantity FHIR.Quantity):
    case
        when quantity is null then null
        when quantity.value is null then null
        when quantity.comparator is not null then
            Message(null, true, 'FHIRHelpers.ToQuantity.ComparatorQuantityNotSupported', 'Error', 'FHIR Quantity value has a comparator and cannot be converted to a System.Quantity value.')
        when quantity.system is null or quantity.system.value = 'http://unitsofmeasure.org'
              or quantity.system.value = 'http://hl7.org/fhirpath/CodeSystem/calendar-units' then
            System.Quantity { value: quantity.value.value, unit: ToCalendarUnit(Coalesce(quantity.code.value, quantity.unit.value, '1')) }
        else
            Message(null, true, 'FHIRHelpers.ToQuantity.InvalidFHIRQuantity', 'Error', 'Invalid FHIR Quantity code: ' & quantity.unit.value & ' (' & quantity.system.value & '|' & quantity.code.value & ')')
    end

define function ToCalendarUnit(unit System.String):
    case unit
        when 'ms' then 'millisecond'
        when 's' then 'second'
        when 'min' then 'minute'
        when 'h' then 'hour'
        when 'd' then 'day'
        when 'wk' then 'week'
        when 'mo' then 'month'
        when 'a' then 'year'
        else unit
    end

/**
 * @description: Sorts a list and returns the requested index
 */
define fluent function sortedIndex(immunizations List<Immunization>, idx Integer):
  if exists( immunizations ) then
    (immunizations I sort by start of occurrence.toInterval())[idx]
  else null

/**
 * @description: Gets the doses from the primary series
 */
define fluent function seriesPrimary(immunizations List<Immunization>):
  immunizations I where
    exists( I.protocolApplied pa where pa.series = 'Primary series' )

define function ToString(value string): value.value

define function ToString(value ImmunizationStatus): value.value

define function ToBoolean(value boolean): value.value

define function ToConcept(concept FHIR.CodeableConcept):
    if concept is null then
        null
    else
        System.Concept {
            codes: concept.coding C return ToCode(C),
            display: concept.text.value
        }

define function ToCode(coding FHIR.Coding):
    if coding is null then
        null
    else
        System.Code {
          code: coding.code.value,
          system: coding.system.value,
          version: coding.version.value,
          display: coding.display.value
        }

/**
 * @description: Gets the type of antigen dose extension value from an Immunization
 */
define fluent function typeOfDose(immz Immunization):
  (First(
    immz.extension E where E.url = 'http://smart.who.int/immunizations/StructureDefinition/IMMZTypeOfDose'
  )).value as FHIR.CodeableConcept

define function ToString(value uri): value.value

define function ToString(value AdministrativeGender): value.value

define function ToString(value AddressUse): value.value