{ "resourceType" : "StructureMap", "id" : "SHCToCoreDataSetTR", "text" : { "status" : "generated", "div" : "

Generated Narrative: StructureMap SHCToCoreDataSetTR

\r\nmap "http://smart.who.int/ddcc/StructureMap/SHCToCoreDataSetTR" = "SHCToCoreDataSetTR"\r\n\r\nuses "http://hl7.org/fhir/uv/shc-vaccination/StructureDefinition/shc-infectious-disease-laboratory-bundle-dm" alias SHCLabBundleDM as source\r\nuses "http://hl7.org/fhir/uv/shc-vaccination/StructureDefinition/shc-patient-general-dm" alias SHCPatientDM as source\r\nuses "http://hl7.org/fhir/uv/shc-vaccination/StructureDefinition/shc-infectious-disease-laboratory-result-observation-dm" alias SHCLabDM as source\r\nuses "http://hl7.org/fhir/StructureDefinition/Bundle" alias DDCCBundle as target\r\nuses "http://smart.who.int/ddcc/StructureDefinition/DDCCCoreDataSetTR" alias DDCCTR as target\r\n\r\ngroup SHCToTR(source shc : SHCLabBundleDM, target ddccBundle : DDCCBundle) {\r\n  shc.entry as patientEntrySHC then {\r\n    patientEntrySHC.resource : Patient first as patient then {\r\n      shc.entry as entry then {\r\n        // entry.resource : Immunization as immunization where vaccineCode.memberOf('http://smart.who.int/ddcc/ValueSet/who-ddcc-allowed-vaccines-covid-19') ->  ddccBundle.entry as outentry,  create('http://smart.who.int/ddcc/StructureDefinition/DDCCCoreDataSetVS') as ddcc then {\r\n        entry.resource : Observation as lab ->  ddccBundle.entry as outentry,  create('http://smart.who.int/ddcc/StructureDefinition/DDCCCoreDataSetTR') as ddcc then {\r\n          lab then PatientToDDCCTR(patient, ddcc) "set patient";\r\n          lab -> ddcc.test as test then LabToDDCC(lab, test) "set test";\r\n          lab -> outentry.resource = ddcc "set outentry";\r\n        } "labs";\r\n      } "entries";\r\n    } "get patient";\r\n  } "find patient";\r\n}\r\n\r\ngroup PatientToDDCCTR(source patient : SHCPatientDM, target tgt : DDCCTR) {\r\n  patient.name as name then NameToText(name, tgt) "set name";\r\n  patient.birthDate as birthDate -> tgt.birthDate = birthDate "set birthDate";\r\n  patient.identifier first as identifier -> tgt.identifier = identifier "set identifier";\r\n}\r\n\r\ngroup NameToText(source name : HumanName, target ddcc) {\r\n  // append doesn't work until ddcc.name is set\r\n  name.given first as given -> ddcc.name = (given.replaceMatches('$', ' ')) "set first name";\r\n  // name.given not_first as other -> ddcc.name as tName, ddcc.name = append( tName, other ) "set other names";\r\n  name.given not_first as other ->  ddcc.name as tName,  (other.replaceMatches('$', ' ')) as spaced,  ddcc.name = append(tName, spaced) "set other names";\r\n  name.family as family ->  ddcc.name as tName,  ddcc.name = append(tName, family) "add family name";\r\n  name.text as text -> ddcc.name = text "set full name";\r\n}\r\n\r\ngroup LabToDDCC(source lab : SHCLabDM, target test) {\r\n  lab.code as code then {\r\n    code.coding first as labType then {\r\n      labType -> test.type = labType "set default type";\r\n      labType where labType.memberOf('http://smart.who.int/ddcc/ValueSet/lab-test-type-covid19-loinc') -> test.type = translate(labType, 'http://smart.who.int/ddcc/ConceptMap/lab-test-type-covid19-loinc-to-icd11', 'Coding') "translate loinc type";\r\n      labType where labType.memberOf('http://smart.who.int/ddcc/ValueSet/lab-test-type-covid19-loinc') -> test.pathogen = c('http://id.who.int/icd11/mms', 'XN109') "set pathogen to COVID";\r\n    };\r\n  };\r\n  lab.effectiveDateTime as date -> test.date = date "set date";\r\n  lab.valueCodeableConcept as value then {\r\n    value.coding first as result then {\r\n      result -> test.result = result "set default result";\r\n      result where result.memberOf('http://smart.who.int/ddcc/ValueSet/lab-test-qual-result-snomed') -> test.result = translate(result, 'http://smart.who.int/ddcc/ConceptMap/lab-test-qual-result-snomed-to-icd11') "translate snomed result";\r\n    };\r\n  };\r\n// no target for result valueQuantity (for Ab titers) or valueString (for unmapped text)\r\n// pathogen and country are required, no source in SHC\r\n}\r\n\r\n
" }, "url" : "http://smart.who.int/ddcc/StructureMap/SHCToCoreDataSetTR", "version" : "1.0.0", "name" : "SHCToCoreDataSetTR", "status" : "draft", "date" : "2024-10-16T15:43:03+00:00", "publisher" : "WHO", "contact" : [{ "name" : "WHO", "telecom" : [{ "system" : "url", "value" : "http://who.int" }] }], "jurisdiction" : [{ "coding" : [{ "system" : "http://unstats.un.org/unsd/methods/m49/m49.htm", "code" : "001" }] }], "structure" : [{ "url" : "http://hl7.org/fhir/uv/shc-vaccination/StructureDefinition/shc-infectious-disease-laboratory-bundle-dm", "mode" : "source", "alias" : "SHCLabBundleDM" }, { "url" : "http://hl7.org/fhir/uv/shc-vaccination/StructureDefinition/shc-patient-general-dm", "mode" : "source", "alias" : "SHCPatientDM" }, { "url" : "http://hl7.org/fhir/uv/shc-vaccination/StructureDefinition/shc-infectious-disease-laboratory-result-observation-dm", "mode" : "source", "alias" : "SHCLabDM" }, { "url" : "http://hl7.org/fhir/StructureDefinition/Bundle", "mode" : "target", "alias" : "DDCCBundle" }, { "url" : "http://smart.who.int/ddcc/StructureDefinition/DDCCCoreDataSetTR", "mode" : "target", "alias" : "DDCCTR" }], "group" : [{ "name" : "SHCToTR", "typeMode" : "none", "input" : [{ "name" : "shc", "type" : "SHCLabBundleDM", "mode" : "source" }, { "name" : "ddccBundle", "type" : "DDCCBundle", "mode" : "target" }], "rule" : [{ "name" : "find patient", "source" : [{ "context" : "shc", "element" : "entry", "variable" : "patientEntrySHC" }], "rule" : [{ "name" : "get patient", "source" : [{ "context" : "patientEntrySHC", "type" : "Patient", "element" : "resource", "listMode" : "first", "variable" : "patient" }], "rule" : [{ "name" : "entries", "source" : [{ "context" : "shc", "element" : "entry", "variable" : "entry" }], "rule" : [{ "name" : "labs", "source" : [{ "context" : "entry", "type" : "Observation", "element" : "resource", "variable" : "lab" }], "target" : [{ "context" : "ddccBundle", "contextType" : "variable", "element" : "entry", "variable" : "outentry" }, { "contextType" : "variable", "variable" : "ddcc", "transform" : "create", "parameter" : [{ "valueString" : "http://smart.who.int/ddcc/StructureDefinition/DDCCCoreDataSetTR" }] }], "rule" : [{ "name" : "set patient", "source" : [{ "context" : "lab" }], "dependent" : [{ "name" : "PatientToDDCCTR", "variable" : ["patient", "ddcc"] }] }, { "name" : "set test", "source" : [{ "context" : "lab" }], "target" : [{ "context" : "ddcc", "contextType" : "variable", "element" : "test", "variable" : "test" }], "dependent" : [{ "name" : "LabToDDCC", "variable" : ["lab", "test"] }] }, { "name" : "set outentry", "source" : [{ "context" : "lab" }], "target" : [{ "context" : "outentry", "contextType" : "variable", "element" : "resource", "transform" : "copy", "parameter" : [{ "valueId" : "ddcc" }] }] }] }] }] }] }] }, { "name" : "PatientToDDCCTR", "typeMode" : "none", "input" : [{ "name" : "patient", "type" : "SHCPatientDM", "mode" : "source" }, { "name" : "tgt", "type" : "DDCCTR", "mode" : "target" }], "rule" : [{ "name" : "set name", "source" : [{ "context" : "patient", "element" : "name", "variable" : "name" }], "dependent" : [{ "name" : "NameToText", "variable" : ["name", "tgt"] }] }, { "name" : "set birthDate", "source" : [{ "context" : "patient", "element" : "birthDate", "variable" : "birthDate" }], "target" : [{ "context" : "tgt", "contextType" : "variable", "element" : "birthDate", "transform" : "copy", "parameter" : [{ "valueId" : "birthDate" }] }] }, { "name" : "set identifier", "source" : [{ "context" : "patient", "element" : "identifier", "listMode" : "first", "variable" : "identifier" }], "target" : [{ "context" : "tgt", "contextType" : "variable", "element" : "identifier", "transform" : "copy", "parameter" : [{ "valueId" : "identifier" }] }] }] }, { "name" : "NameToText", "typeMode" : "none", "input" : [{ "name" : "name", "type" : "HumanName", "mode" : "source" }, { "name" : "ddcc", "mode" : "target" }], "rule" : [{ "name" : "set first name", "source" : [{ "context" : "name", "element" : "given", "listMode" : "first", "variable" : "given" }], "target" : [{ "context" : "ddcc", "contextType" : "variable", "element" : "name", "transform" : "evaluate", "parameter" : [{ "valueString" : "given.replaceMatches('$', ' ')" }] }] }, { "name" : "set other names", "source" : [{ "context" : "name", "element" : "given", "listMode" : "not_first", "variable" : "other" }], "target" : [{ "context" : "ddcc", "contextType" : "variable", "element" : "name", "variable" : "tName" }, { "contextType" : "variable", "variable" : "spaced", "transform" : "evaluate", "parameter" : [{ "valueString" : "other.replaceMatches('$', ' ')" }] }, { "context" : "ddcc", "contextType" : "variable", "element" : "name", "transform" : "append", "parameter" : [{ "valueId" : "tName" }, { "valueId" : "spaced" }] }] }, { "name" : "add family name", "source" : [{ "context" : "name", "element" : "family", "variable" : "family" }], "target" : [{ "context" : "ddcc", "contextType" : "variable", "element" : "name", "variable" : "tName" }, { "context" : "ddcc", "contextType" : "variable", "element" : "name", "transform" : "append", "parameter" : [{ "valueId" : "tName" }, { "valueId" : "family" }] }] }, { "name" : "set full name", "source" : [{ "context" : "name", "element" : "text", "variable" : "text" }], "target" : [{ "context" : "ddcc", "contextType" : "variable", "element" : "name", "transform" : "copy", "parameter" : [{ "valueId" : "text" }] }] }] }, { "name" : "LabToDDCC", "typeMode" : "none", "input" : [{ "name" : "lab", "type" : "SHCLabDM", "mode" : "source" }, { "name" : "test", "mode" : "target" }], "rule" : [{ "name" : "code", "source" : [{ "context" : "lab", "element" : "code", "variable" : "code" }], "rule" : [{ "name" : "coding", "source" : [{ "context" : "code", "element" : "coding", "listMode" : "first", "variable" : "labType" }], "rule" : [{ "name" : "set default type", "source" : [{ "context" : "labType" }], "target" : [{ "context" : "test", "contextType" : "variable", "element" : "type", "transform" : "copy", "parameter" : [{ "valueId" : "labType" }] }] }, { "name" : "translate loinc type", "source" : [{ "context" : "labType", "condition" : "labType.memberOf('http://smart.who.int/ddcc/ValueSet/lab-test-type-covid19-loinc')" }], "target" : [{ "context" : "test", "contextType" : "variable", "element" : "type", "transform" : "translate", "parameter" : [{ "valueId" : "labType" }, { "valueString" : "http://smart.who.int/ddcc/ConceptMap/lab-test-type-covid19-loinc-to-icd11" }, { "valueString" : "Coding" }] }] }, { "name" : "set pathogen to COVID", "source" : [{ "context" : "labType", "condition" : "labType.memberOf('http://smart.who.int/ddcc/ValueSet/lab-test-type-covid19-loinc')" }], "target" : [{ "context" : "test", "contextType" : "variable", "element" : "pathogen", "transform" : "c", "parameter" : [{ "valueString" : "http://id.who.int/icd11/mms" }, { "valueString" : "XN109" }] }] }] }] }, { "name" : "set date", "source" : [{ "context" : "lab", "element" : "effectiveDateTime", "variable" : "date" }], "target" : [{ "context" : "test", "contextType" : "variable", "element" : "date", "transform" : "copy", "parameter" : [{ "valueId" : "date" }] }] }, { "name" : "valueCodeableConcept", "source" : [{ "context" : "lab", "element" : "valueCodeableConcept", "variable" : "value" }], "rule" : [{ "name" : "coding", "source" : [{ "context" : "value", "element" : "coding", "listMode" : "first", "variable" : "result" }], "rule" : [{ "name" : "set default result", "source" : [{ "context" : "result" }], "target" : [{ "context" : "test", "contextType" : "variable", "element" : "result", "transform" : "copy", "parameter" : [{ "valueId" : "result" }] }] }, { "name" : "translate snomed result", "source" : [{ "context" : "result", "condition" : "result.memberOf('http://smart.who.int/ddcc/ValueSet/lab-test-qual-result-snomed')" }], "target" : [{ "context" : "test", "contextType" : "variable", "element" : "result", "transform" : "translate", "parameter" : [{ "valueId" : "result" }, { "valueString" : "http://smart.who.int/ddcc/ConceptMap/lab-test-qual-result-snomed-to-icd11" }] }] }] }] }] }] }